Basic Information

Insect: Pogonomyrmex californicus
Gene Symbol: -
Assembly: GCA_017141365.1
Location: JAEVLP010006584.1:12228-13743[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.1e-06 0.00061 21.0 0.5 2 23 72 93 71 93 0.95

2 9 0.0045 0.67 11.4 3.6 1 23 95 118 95 118 0.96

3 9 0.028 4.2 8.9 3.5 1 23 123 146 123 146 0.95

4 9 8.4e-05 0.013 16.9 3.4 1 23 152 175 152 175 0.95

5 9 0.006 0.9 11.0 0.8 3 23 183 204 181 204 0.95

6 9 6.3e-05 0.0093 17.3 0.2 1 23 209 231 209 231 0.97

7 9 2.2e-06 0.00032 21.9 0.1 2 23 238 259 237 259 0.97

8 9 4.9e-06 0.00073 20.7 0.2 1 23 265 287 265 287 0.98

9 9 0.00078 0.12 13.8 2.1 1 23 293 315 293 315 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.1e-06	0.00061	21.0	0.5	2	23	72	93	71	93	0.95
2	9	0.0045	0.67	11.4	3.6	1	23	95	118	95	118	0.96
3	9	0.028	4.2	8.9	3.5	1	23	123	146	123	146	0.95
4	9	8.4e-05	0.013	16.9	3.4	1	23	152	175	152	175	0.95
5	9	0.006	0.9	11.0	0.8	3	23	183	204	181	204	0.95
6	9	6.3e-05	0.0093	17.3	0.2	1	23	209	231	209	231	0.97
7	9	2.2e-06	0.00032	21.9	0.1	2	23	238	259	237	259	0.97
8	9	4.9e-06	0.00073	20.7	0.2	1	23	265	287	265	287	0.98
9	9	0.00078	0.12	13.8	2.1	1	23	293	315	293	315	0.97

Sequence Information

Coding Sequence: ATGGAAAATGATTCTTCACCCGTGGATCCTCTGAACGTTGTGGACGCCAGTAATACGGATCCATCGTCCGAAAGCATAGAATACGCATCTGAACACGACTTATCAAACAGAATCAGACGACATATTGCCAGGAAAAGAAAAACGAGAGAAGACAAGAAGAAGCTAAACTTTAGTCGTGATAAAATCGTCAAGAAGAAGCCTAAACTTTCCTTGGAGTGCGCCACGTGCGGCAAACGTTTTAGCCAGAAAGCAACCATGATAAAACACATGAGCCTGCACAAGTACCAATGTCAAACCTGCTGCCAAAGTTTTAGTCTGAAGCGAGAGCTGAAGCGTCACGTCATGAACGTTCATGGGCCTCTTTTATATCCCTGCAGTATCTGTGAGTACAAGAGCAACAACAAGTGCACCTTGAAAGATCATTTCATACGGAAGCACACCAGCGACTTCCAACATTCCTGCACAGTTTGTAAGAAACAATTCAAGATCAAGAATGATCTGAAGCAACACATGAATCAGGTGCACAGCGGCGAGCCACCTATCATCTGCAGTATCTGCGGGCACGCCTGCAAGAACGTGCCCGCCATCAAGGCGCACATGAAGTATCGACATTACAAGCCCGCTTACGAGTGCAAGATATGCAAGCGCGGTCTGACCACGCAGGAAAATCTCGACCAACACTTGATCTGGCATGAGCGAAAGGAGAAGGTTGTCTGTCCCACCTGCGGCAAGACCTTCGGTCAGAAGAGGGACTTGGATCTCCACTTGAGGATCCATCAGGGTATCCGGCCTTTTTCCTGCCCGGTCTGCAACAAGACGTTCCCCAGAAAAACCGCGCAGGAGCAACACATATTGATTCACACCGGCAAGAAGCCGTACATTTGCGATATATGTGGTCATACCTTTGCACAGAAACCCGGACTCATTTGTCATAGGAAACGACATCCTGGACCGCTGCCGCCGTTGCCTGTGGTATCCATTAAAAAAATAATCATGGACTTTACGCAGGAATTGGTCTCTTCTACGCAACAGGATAAAATAGATAGTTAG
Protein Sequence: MENDSSPVDPLNVVDASNTDPSSESIEYASEHDLSNRIRRHIARKRKTREDKKKLNFSRDKIVKKKPKLSLECATCGKRFSQKATMIKHMSLHKYQCQTCCQSFSLKRELKRHVMNVHGPLLYPCSICEYKSNNKCTLKDHFIRKHTSDFQHSCTVCKKQFKIKNDLKQHMNQVHSGEPPIICSICGHACKNVPAIKAHMKYRHYKPAYECKICKRGLTTQENLDQHLIWHERKEKVVCPTCGKTFGQKRDLDLHLRIHQGIRPFSCPVCNKTFPRKTAQEQHILIHTGKKPYICDICGHTFAQKPGLICHRKRHPGPLPPLPVVSIKKIIMDFTQELVSSTQQDKIDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00869092;
90% Identity: iTF_01421743;
80% Identity: iTF_01229231;