Basic Information

Insect: Pogonomyrmex californicus
Gene Symbol: -
Assembly: GCA_017141365.1
Location: JAEVLP010004797.1:12878-15148[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0009 0.13 13.6 0.6 1 23 349 372 349 372 0.96

2 10 6.8e-06 0.001 20.3 0.5 1 23 378 400 378 400 0.99

3 10 1.3e-07 1.9e-05 25.7 0.3 1 23 406 428 406 428 0.99

4 10 0.29 44 5.7 5.4 1 23 434 456 434 456 0.98

5 10 9e-06 0.0013 19.9 0.3 1 20 462 481 462 482 0.96

6 10 0.024 3.6 9.1 2.3 1 23 491 511 491 511 0.94

7 10 1.4e-06 0.00021 22.4 0.5 3 23 519 539 518 539 0.98

8 10 0.00014 0.021 16.1 1.4 1 23 545 567 545 567 0.98

9 10 0.0015 0.23 12.9 3.4 1 21 573 593 573 596 0.96

10 10 0.14 21 6.7 3.8 3 23 604 625 602 625 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0009	0.13	13.6	0.6	1	23	349	372	349	372	0.96
2	10	6.8e-06	0.001	20.3	0.5	1	23	378	400	378	400	0.99
3	10	1.3e-07	1.9e-05	25.7	0.3	1	23	406	428	406	428	0.99
4	10	0.29	44	5.7	5.4	1	23	434	456	434	456	0.98
5	10	9e-06	0.0013	19.9	0.3	1	20	462	481	462	482	0.96
6	10	0.024	3.6	9.1	2.3	1	23	491	511	491	511	0.94
7	10	1.4e-06	0.00021	22.4	0.5	3	23	519	539	518	539	0.98
8	10	0.00014	0.021	16.1	1.4	1	23	545	567	545	567	0.98
9	10	0.0015	0.23	12.9	3.4	1	21	573	593	573	596	0.96
10	10	0.14	21	6.7	3.8	3	23	604	625	602	625	0.97

Sequence Information

Coding Sequence: ATGATTAGCATGCAACAGCAGACGGTTTTGAATAATGTAACCGGGCCCGAGCAGCCGCAGGAGGAGATTCAGCTGACCGAATTGTTGCCGGTGAAGCAATCGCGCATCAGAGAAAATGTCTTCAAGGACGCCGACGCAACCGATGCTCTGAGGGCGCTTAGGAGTCTCTCAGGCGACTGCGGTGACAGCGAAAATTTCAATCTGCGGGAATTTGACTTTTGCAAGAACGTCGAACAGTCTACACGCCAGAACAACAAGAATCGACGAGCGGAAACCCGTCGGAAAAGAAGAGAAGAGTCAGCCAAGAACAGTGCTAAAGATGTGGACTTTGACGAAGAGAAAAATGACGAGGTGGTAGAGAAGAAGGCGCGTAACGGTAGGAAGATTGTTCGCGGTAAGGCGCCCAAGAGGAAACTAACAAAGTTGAGCAAGAGAAGGGACGACGATAAGGGAAGTGATTATGAAACGGAAAGGAAATTGATTAGAAAGGATATCACCGAATGCGACGAAGACGACGGCAACGAACAATTGTACTTGGATCTGGAAAAAAGAGATTGCTTTAAAGACGAGGTTTACGTATATAGACGAGAACCGTTGGATCCATGTTCAAGCTCGGAACCAGAGGAATCAGGAGCGATCACTCGCAAGGTCCAGCAGGATCTTTGCGAGAAGGATTATGTCGCGGGTAGAGAATTGTCCGATGGAAAAGAAAATTTTGCCGAAAAGACTTCTGACAAGGACGACGGGAAGGAAGAATGCAAATTCAGTGCGGAGGGCGAGAAAGAAAATTCCTCAGAAAAAGAGCTCAGACTGAAAATCGACGCCATCATTCAAGCAAATTACCTGTTGGAGCGCGAGAATAACAACGTCGTCGCTTCCGACGGACTCAAAATCGCGGAGCACATCGGCACCTCTTCCACTACCGACTCGGTGAATGCAGACAGTAGCGACGGGTCTTCGTGCAATTTGATCGAGAAGAGGACGAAGAGGAAACGGACCGATCAGACTAGACAGTCGAACGACCAGCAGAATCCTCAGAAGAAGTACTGCTGCGTCGTGTGCGACGCGCGTTTCAAGGGTAGCGGCGGTCTGCGGAATCATTATAAGGTGGTGCACGGCGCCGGGCCGGTGTTCAAGTGCGACGAGTGTGGCAAGGAGTTTCCCCTGAAAGAACGCCTGAAGCTGCATGTGCGCACGCACACCGGCTTCAAGCCGTACAAATGTCCGGAGTGCGATAAGAGCTTCGCCCGAGGGGGTCAACTGGTGCAACATCGTCGTACGCACAGCCAAGTCAGGCCGTTCCACTGCAAGCTGTGCTCCAACACCTTCACGTGCGCGGCCAACCTGTCCCTACACCTGAAACGCCACAACGGCCAGAAGGACCACAAGTGCGACCTGTGCGGGCGCGCCTTCGTGCGCCGCGACGCCCTGAAGAAGCATCTGGAATGCCTGCACCGCGACGTCAAGTCGTTCCTCTGCGCGATCTGCAACAAGACCTTCAAGGGCCACCTGCCGCAACACATGAGGACGCACGCGCGCGATCGTCCCCACGGGTGCGCCACGTGTGGCCAGCGTTTCGCTCAGAAGTCCCAGCTCACCGTGCACCAAAGGACCCACTCCGGCCAGCGACCATTTCGCTGTCTGGTCTGCTGGCAGGCCTTCGCCCATTCGACCGCCCTGAAGCTGCACACCCGACGTCACACCGGGGAACGGCCGTTCAAATGTTCCGAGTGCAATGCCGGCTTCACTCAACTGCCACATTGGAAGAAGCACATGAAATGCATACATGGTAGGAATGATCCATATGGTTGCAAACGTTGTAAAAGTTTTTTCAGGATCAAGAGCGATTTGGAGAGCCACGAGAAGACTTGCCATCCAGAAATGGAGACGGAGGACGATGACGGCAGTGTCGCCGGTAGACCGACCGGTAGCTCCGAAGTCATCGAGAAGAGCTCCGTCAATGCCAAATACAAGTTGATGACGGTGGAGAAAATGCGGCTGTTGCTGGCGGTGCTGCTGAAGAGGATCAGTAAGCAGGAACGGTTAGACGAGCTCGGTTTCGGTAAGCGTCTCATCGACGACGTTCTTCAGGACTCATTGGTATCGGCTGGCAAAGAACCGGTCACGGGGAGTGGCTTATCCGAACTCGAGGCTCTCACCCGAAATCTGGAAGCCTTCCTCGAATGGACAGTGCCGAAGGAGCATTGGGAGAATTTCCGTAAAATGAAAAAATCACCCGAGGAAATTCTGGAAACGCTCACAGCTACATAA
Protein Sequence: MISMQQQTVLNNVTGPEQPQEEIQLTELLPVKQSRIRENVFKDADATDALRALRSLSGDCGDSENFNLREFDFCKNVEQSTRQNNKNRRAETRRKRREESAKNSAKDVDFDEEKNDEVVEKKARNGRKIVRGKAPKRKLTKLSKRRDDDKGSDYETERKLIRKDITECDEDDGNEQLYLDLEKRDCFKDEVYVYRREPLDPCSSSEPEESGAITRKVQQDLCEKDYVAGRELSDGKENFAEKTSDKDDGKEECKFSAEGEKENSSEKELRLKIDAIIQANYLLERENNNVVASDGLKIAEHIGTSSTTDSVNADSSDGSSCNLIEKRTKRKRTDQTRQSNDQQNPQKKYCCVVCDARFKGSGGLRNHYKVVHGAGPVFKCDECGKEFPLKERLKLHVRTHTGFKPYKCPECDKSFARGGQLVQHRRTHSQVRPFHCKLCSNTFTCAANLSLHLKRHNGQKDHKCDLCGRAFVRRDALKKHLECLHRDVKSFLCAICNKTFKGHLPQHMRTHARDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCSECNAGFTQLPHWKKHMKCIHGRNDPYGCKRCKSFFRIKSDLESHEKTCHPEMETEDDDGSVAGRPTGSSEVIEKSSVNAKYKLMTVEKMRLLLAVLLKRISKQERLDELGFGKRLIDDVLQDSLVSAGKEPVTGSGLSELEALTRNLEAFLEWTVPKEHWENFRKMKKSPEEILETLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00126190;
90% Identity: iTF_01228550;
80% Identity: -