Basic Information

Insect: Pogonomyrmex californicus
Gene Symbol: -
Assembly: GCA_017141365.1
Location: JAEVLP010005003.1:40798-43970[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.035 5.2 8.6 0.2 3 23 455 477 454 477 0.94

2 10 0.002 0.3 12.5 1.4 1 23 483 507 483 507 0.98

3 10 0.00019 0.028 15.8 0.2 1 23 513 537 513 537 0.97

4 10 0.00034 0.051 15.0 0.2 3 23 545 567 543 567 0.93

5 10 5.9e-05 0.0087 17.4 1.7 1 23 574 598 574 598 0.97

6 10 0.00012 0.017 16.4 0.8 2 23 606 629 605 629 0.96

7 10 4.3e-06 0.00063 20.9 2.0 1 23 635 659 635 659 0.98

8 10 4.5e-06 0.00066 20.9 0.5 1 23 665 689 665 689 0.97

9 10 0.00099 0.15 13.5 0.7 1 23 695 717 695 717 0.99

10 10 0.034 5 8.7 0.5 1 23 792 817 792 817 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.035	5.2	8.6	0.2	3	23	455	477	454	477	0.94
2	10	0.002	0.3	12.5	1.4	1	23	483	507	483	507	0.98
3	10	0.00019	0.028	15.8	0.2	1	23	513	537	513	537	0.97
4	10	0.00034	0.051	15.0	0.2	3	23	545	567	543	567	0.93
5	10	5.9e-05	0.0087	17.4	1.7	1	23	574	598	574	598	0.97
6	10	0.00012	0.017	16.4	0.8	2	23	606	629	605	629	0.96
7	10	4.3e-06	0.00063	20.9	2.0	1	23	635	659	635	659	0.98
8	10	4.5e-06	0.00066	20.9	0.5	1	23	665	689	665	689	0.97
9	10	0.00099	0.15	13.5	0.7	1	23	695	717	695	717	0.99
10	10	0.034	5	8.7	0.5	1	23	792	817	792	817	0.97

Sequence Information

Coding Sequence: ATGTCTTGCAGAGGAGCTGCCGCTGTCGCCGCTTTCATGTCGAGACGACAAAGTCGCGAGAGAATCTGCTCCGAGGGCGAAGGAACGGAATGTATGCCCGTCGATACACTTTTTGCTTCGTCGAGAACAGAAGAGATTGGTAGAAAGGATCGAAGAATTAAGAGGAATGAGAATTGGCATCAAACATCAGCCGAGAAGAACATTGATGTCGAGACGGTAGCTAGCGATTTTGAAAAATGGCTAAAAATGCGCAGCACGGAGCCATCGGTACCATCGAGCATGGACATGGATGCTACCAAGGTGGTGGAAGGCGTAGACCGATATCTGGGAGAAGAGATGCTGTCACACGGTTGCTTTCTTGGCAAAGATCCATATGGTTTGTCTCTTGACATCGATCTAACGGATACCAAGAAGCTCAATTTATCATCAGGGTACGATGCAATATTACAAGATCTAACGCACGGCGAAAATCGGCTATTAGAGCCGCCGTGCGAGAAGGTCGTCGACGAGTTTATGCTGCCAGAGTTTCAATTAGATCATTTGGATCCATTGACAGCGCTCTCGCCCGACGATATGATGGTGGCCGGTGAAATTCTGCCATCCACGAGCAGTCAACCAACGCTGAACGTGGAAAACCAACATGTAGAACAAAACGCACCAAAAATAAAAAATCTAGGGCAGGAAAGTGAGATATCCTGTGAGAAATCCACACAGGTTACTCTCAACGAGCTACCGGTGAATATAACGGTTTTACACGAGATGGAAAACATAAAATCTATACAGGAAACTATAATACAACCTTCAGAACAAAATTCCTCGGAGCTTTTTATTGGAACTATACCGACAATGGAGGAGAATTTGTCAAATACCATAAATTCTATGGAAACAGAAACTCAAAATGTCATAATAGAACAGTTGAAACCCAAATCTAAAGCGAAACTTGTACCTCGTATTATCAAAAAACGTCGCAAGATGACGGAGCGAATGGAGAAGAAACTTGACAAACATATCAACAGTAAAAGCTTTGCCGTTGATGCAAATTCGCAGGATGGCATGATGGCTTTGGTTGCTATATCTACCGATAAGATCTCCAACACGACACAGATCGTTATCAATACTGGCACAGAAAAGCAAGTTTATCAGGGTAAGACTTCGGAATTGATTGAAGCTACAGGCAATTTCCCTAAATTACCTAAAATAGACACTTCTGCTGCGGCTTGGAATAGCTCGGTTGAATACGGCATTGACAGCAATCCAAGTAGTCAATATGAAATTTTGATATCCAATGCATTGGAGGAACTAGGCATTACCGATGATAGCCTACAGCCCTTGTGCGCCACCGAAAATGACAAGGTCTGGCTCTGTCCACGAGATGGTTGCAATAGACAGTTTGGCAGATTGTATACACTAAAGGGTCACTTGTTGGCTCATTATGGAGTTAGGCCATTTAAGTGCGATTTTGAAGGCTGCACTTGGGCCTTTTATTCCGAGTTCAAATTGAAAAGGCACAAAGAGACTCATTTGAAGCGCAAGGATTATGTGTGCGAAGTAGAGGGTTGTAACCGTCGTTTTACCACTGTCTACAATTTATGGAGCCACGCGAAGTTACACAATCGTCCTAATCGAATTGTCTGTCAGGTGCCAGATTGCAACGAAAAGTTTCAAACAAAACGTGCATTGGAGTTACACATGAAGTCGCACGATCAACGCCACGCACCTTACGTGTGTCAGCACGAGGGTTGCGGCAAGCGTTATTATAGCAGCAACGCATTGACATCGCATCAGCGATCGCATAGCTACAAAGAAGTGGACATCAAATGCTCATGGTTAGGCTGCGGCAAAATTTTCGATAAACCATGCCGACTCAAGGCCCACATGCGTTCCCATACCGGTCACAAACCTTATCCCTGCACTTTCCAGGATTGCAAGTGGGCTTTCTCATCGTCCAGCAAGCTCAAACGTCACCAGAAGAAACATACGAACGAGCGTAAGTTTGTATGCGATGTGCCGGATTGTGGTAAAGCGTTTATGCGCTCGGAGCACCTGAAGGAACATCGGTTGACGCACACAGAAGGTCGTTTCTTTCAGTGCTTTGTATGCGCTGCCCGATTCTCTGCCAAGAGTAGCTTATACGTGCACATTAAGAAGCATCAGCAAATCAAACCAGATCTGAATATAAATGGTATATCTCAATGCACCTCTAGTGATCAAAAACGCACGAGAACGAAAGATTCTCGTTGTTCGCGAGTAAAGCCCATTGTTGAGTCGGACCAACAAAATGCAGAATTAATTAACGCCACAGAGAGTATTATGAAAGAGAACGGCGTTGAGCAGAATGCTTATCTGATGGATGAAGATCAACTGGAATGGTTGTACCGTTGTCCGGTAGATGTATGCGGGCATTTGATGAATAGCGAGAAGAATCTTCGTGAGCATATGCTGAAAACACACGACATACATTGCGATGATTTACTATCTAAACCGTCTTCGGACAACACCGATATAGATTACGTTTTGTATACCGTGCATAGATCATCCGCGAGTTCGCCTACTGCCGTTGAGGAAGAACAAATGGTCATGGTGACTCCATGCGATGCCGTTATCCTTGATGCCTCCCCATCAGAAACAGATCATTGTCTGCCAGAATCTACCACACCTTTCAACACTTTGCCGAAGAGTTCGGAAACGTCCCAAAACAATGTGGAAACTGACAAGGAAACTATATCGATGAAAGAACAAGGCTCGGCAAGGACAGATCTAACATATTCCGATTGGTCTAGGCTAAAGGAGAACGGTACGCTGGTGAATCCGATAGTGACTGAGACGTCGGACATTATGACATTGGACACGAATGGTGATTTGAATGAGGGTCTGTTATTTACAGAGGAATTGCCATCGATGTATTATCAGGACGATGTGGCAGGTACAGAATATCAAGTGCTGTTATTAGATTCAAGTCCGCTCGAAAGTGCTGGCAATTTACGTGATCTCGAGTGA
Protein Sequence: MSCRGAAAVAAFMSRRQSRERICSEGEGTECMPVDTLFASSRTEEIGRKDRRIKRNENWHQTSAEKNIDVETVASDFEKWLKMRSTEPSVPSSMDMDATKVVEGVDRYLGEEMLSHGCFLGKDPYGLSLDIDLTDTKKLNLSSGYDAILQDLTHGENRLLEPPCEKVVDEFMLPEFQLDHLDPLTALSPDDMMVAGEILPSTSSQPTLNVENQHVEQNAPKIKNLGQESEISCEKSTQVTLNELPVNITVLHEMENIKSIQETIIQPSEQNSSELFIGTIPTMEENLSNTINSMETETQNVIIEQLKPKSKAKLVPRIIKKRRKMTERMEKKLDKHINSKSFAVDANSQDGMMALVAISTDKISNTTQIVINTGTEKQVYQGKTSELIEATGNFPKLPKIDTSAAAWNSSVEYGIDSNPSSQYEILISNALEELGITDDSLQPLCATENDKVWLCPRDGCNRQFGRLYTLKGHLLAHYGVRPFKCDFEGCTWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTVYNLWSHAKLHNRPNRIVCQVPDCNEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSHQRSHSYKEVDIKCSWLGCGKIFDKPCRLKAHMRSHTGHKPYPCTFQDCKWAFSSSSKLKRHQKKHTNERKFVCDVPDCGKAFMRSEHLKEHRLTHTEGRFFQCFVCAARFSAKSSLYVHIKKHQQIKPDLNINGISQCTSSDQKRTRTKDSRCSRVKPIVESDQQNAELINATESIMKENGVEQNAYLMDEDQLEWLYRCPVDVCGHLMNSEKNLREHMLKTHDIHCDDLLSKPSSDNTDIDYVLYTVHRSSASSPTAVEEEQMVMVTPCDAVILDASPSETDHCLPESTTPFNTLPKSSETSQNNVETDKETISMKEQGSARTDLTYSDWSRLKENGTLVNPIVTETSDIMTLDTNGDLNEGLLFTEELPSMYYQDDVAGTEYQVLLLDSSPLESAGNLRDLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00128451;
90% Identity: iTF_01228547;
80% Identity: -