Basic Information

Insect: Pogonomyrmex californicus
Gene Symbol: -
Assembly: GCA_017141365.1
Location: JAEVLP010000043.1:9297-17027[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 9.1e-05 0.014 16.8 0.2 2 23 718 739 717 739 0.97

2 17 0.43 64 5.2 2.3 1 19 745 763 745 765 0.91

3 17 2.5 3.7e+02 2.8 0.6 2 23 772 793 771 793 0.94

4 17 0.00012 0.018 16.3 1.3 3 23 802 823 801 823 0.98

5 17 0.0026 0.39 12.2 2.0 1 23 830 853 830 853 0.95

6 17 0.00018 0.026 15.8 0.8 1 23 859 882 859 882 0.94

7 17 6.6 9.8e+02 1.5 1.8 3 23 891 910 890 910 0.83

8 17 1.6e-07 2.3e-05 25.5 1.7 2 23 916 937 915 937 0.97

9 17 2.2e-06 0.00033 21.9 0.2 1 23 943 965 943 965 0.99

10 17 0.00076 0.11 13.9 2.8 2 23 977 999 976 999 0.95

11 17 0.0077 1.1 10.7 2.5 1 23 1005 1028 1005 1028 0.96

12 17 0.028 4.1 8.9 2.8 2 23 1049 1071 1048 1071 0.94

13 17 0.0032 0.48 11.9 0.3 2 23 1078 1100 1077 1100 0.96

14 17 0.00018 0.026 15.9 1.7 3 23 1109 1129 1107 1129 0.96

15 17 0.0012 0.18 13.3 2.3 1 23 1135 1158 1135 1158 0.96

16 17 0.32 47 5.6 3.2 2 23 1165 1186 1164 1186 0.96

17 17 0.0093 1.4 10.4 2.6 1 23 1192 1214 1192 1214 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	9.1e-05	0.014	16.8	0.2	2	23	718	739	717	739	0.97
2	17	0.43	64	5.2	2.3	1	19	745	763	745	765	0.91
3	17	2.5	3.7e+02	2.8	0.6	2	23	772	793	771	793	0.94
4	17	0.00012	0.018	16.3	1.3	3	23	802	823	801	823	0.98
5	17	0.0026	0.39	12.2	2.0	1	23	830	853	830	853	0.95
6	17	0.00018	0.026	15.8	0.8	1	23	859	882	859	882	0.94
7	17	6.6	9.8e+02	1.5	1.8	3	23	891	910	890	910	0.83
8	17	1.6e-07	2.3e-05	25.5	1.7	2	23	916	937	915	937	0.97
9	17	2.2e-06	0.00033	21.9	0.2	1	23	943	965	943	965	0.99
10	17	0.00076	0.11	13.9	2.8	2	23	977	999	976	999	0.95
11	17	0.0077	1.1	10.7	2.5	1	23	1005	1028	1005	1028	0.96
12	17	0.028	4.1	8.9	2.8	2	23	1049	1071	1048	1071	0.94
13	17	0.0032	0.48	11.9	0.3	2	23	1078	1100	1077	1100	0.96
14	17	0.00018	0.026	15.9	1.7	3	23	1109	1129	1107	1129	0.96
15	17	0.0012	0.18	13.3	2.3	1	23	1135	1158	1135	1158	0.96
16	17	0.32	47	5.6	3.2	2	23	1165	1186	1164	1186	0.96
17	17	0.0093	1.4	10.4	2.6	1	23	1192	1214	1192	1214	0.98

Sequence Information

Coding Sequence: ATGCCGAATCCTGAGATCAAACGTGATCACAATTACAGCGAATTAAAAGCTTCTCAACATACCAACAATAGTAATGGTGGCATTATCAACAAGACATTCAAGACAGGATCTGTCATGGGTCAAATTAAGGATATTGATGAGCTGAAGAAGATAACGCCTCGCGTCCGTCTACAAGACACTGAGAGCTTGAATGAATTAACGAGGATTTCATCTTTAAATAACAATAGCGGCAAGTTACAACAGAATAATATGTCTTTTCTTGAGAGAACGCAGCAAGAATTAAGAAAATATTGCCGCACTTGTGCTGGCCTAAAAATGCCTTTGGTAGACATCTTTAGTGAAAAGGGCATCAAATTGCGATTAAGCCAGCAAATCAAGCATCTTGAGGTAGATCCTCATGACAGTCTTTCTACACAAATGTGCATGGATTGTATTTGCGATCTTAGAATGAGTTATAAATTTTTTATGCAAATAAAAAAAGCCGAAATAAAACTCAAATCTATCCATGTAAATCTCACAGCTGACAATAGTGCAAAGAAAGTAGCAACTGATGAATCTTTGAAAACAAAAGAAGAAAAACAATTGTCTTATTCAGATATAAAGCATGGATACCAATTATCTTCCACTTCCATTCAACAAAATCTATCTTTGTTATCAACGAAACAAGAAAATCAAACGACTCACGGAAACCAGACAGACAACTCTGTTCCCAAAATCTGTGCTATCTTCTCGTTGAAAAACGAGTCAAAAATAGGCTCTAGAAAAGAGACAGAAGCGATAAAAAAAAATGAGAATAAGAAGGAAGAGCAAAAGGTTATAGTAGAAGATGAGAAAGAGGAAGAAATGGTGGAGGAGCTGGAGGAGATAGAGGAAGGTGAGCAGAATGAGAAGGATGAGGAGGATGAGGAGATTGAAGAGGAAGAGAAGATGGGCGGAGGGATTTTCGAGGAAGTGGCAGAAGGAGAAGATGAAGAATCCATTGAGGAATTCGATCCCGAAGATCCTGCGCTTCTGGAAAATGAAGAAGAAGAAAAGGAAGAATCTTCGAGATCTCCAACAACCATTTACAAATATGATATGACAGCAAAGTCTTATGTGAGGATGGAAGAAAGTCAGGAAGGATTTTTTTTTAAATCTGGAACTTCCCAGATTTCAGAGAGCGAAGGAGAAAATCAAAAAGAAGGAATGAGACAACCGAATATCTTGAAAAGAAAACTGATAATGCCAATGACTATGATAAAAAATGGAGATGACGATGTACAGAGTGGAATAGGAGAGTACAAGATGCAAAAGTTGGATACAAACAATTTCCTAAATGTGAACAGTTCTTCAGAAGAGGATGGAATTATGTATGTGACTGTGAAGGGATCCAAGCCAAACGAGATTCTTTTAGTAAAGGTAAAGAAAATGGATAAGCCAGTAGAATCAAAGCGCACTATGACCTCCGCGGATATCATGCCTGTTGAACGTTTCCTCAAACGTTACGAGACACTAACATCAAAGGATTTCTCTCGACGTCCTGACGACCGTGAGCAAAAAATTGAGGAACAAATCGAAGAATACAAAAAAAAACGAGAAAAAGTTCTGGGAGGTCAATCAGTAATAAAGTATGTCAGTAATAATTCCGTGATTGAGATGCAGAAAGAGATGCAGGAAGAAGAAATTTCCGCCAAATCAAATATTGAAAAGGCGGAAGAAGAAATTACAATTTTGAAAGAAAAGGATGAAAGAAGAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAACGGAGAAAGATGAAATTGATGAAAATCAAGAGAGGATCAATGACAATACAGAAGAACATCTTTCAAAGTTATCAAGATTGAAACTAAAGTGGGAAGAAGTGAAGCGGAAAAAGGAAAGTTTACAGAAGGAATTGGACGAATCGTATAGCGAAGGAAATTTGGAGAAATTAGCAAAAGTCTTGGGGGAAAAGGAAGAGAATCTGCGGGAATTCCAAGGATATCTTAAACAGCGTAAAATTGTTCTCACTCGCCTTAAGGACGAGGACATAATCTCTCTGTATGAAGATCGATTTTCTACTACTTTGAAATCATCCTCTAAATCCCTCCCGGATCTTATTGACACGCAACTTCCTATTGATATTTCCGAAAAGTACTATTTAGAATGCGATTACTGTTCTGAAACTTTTTCCAATCGTGACGTCCTCGAGGAACACCTCAAGTCTCATGATTATCGTATTCTTCATTGTTGTGATGACTGCGGAGAAGAATTTCAAACTAATAAAGCAAAGAAAAATCATAGTGTGATTTGTGTAAGGAAATTAATTTGTAAATATTGTAACGCTATTCTGGATTCCAGAGGAAAGAAACGTCAACACGAGCAGAAACATGTTGACGCTCTTTATGGTCAACTTTGTGAGGTTTGTGGGGAAAGATTTAAACATCAGGGAACTCTGGACCAGCACCTGAAGACGCAACATACGAGTTTGGAGAAGATTTATCAGTGTCCAAAATGTCCAAAAAAATTTGCTTTTAAACAAAAATTAAGTTTTCATTTAAAGTCTGTTCATACAACTTTAAGGGCGTACCTTTGCGAGGATTGCGGTGCGGATTTTAAGAATCCCGCGAGTTTGAGACATCATAAAATCAGAAAACATCAGCCGGTTGGAAATAAGAGGGAATGTCAGGTTTGCCGAAAACTGGTACCATTTTACAGTTTGTCGAAACACATGCACACGCACAAAGCTTATAGTATCGAATGTCCACATTGCGACAAAATGTTCAAAAACAGCTCGACCTTAAAACAACATGTGAGAATTCACGAAGATCAAAGACAATATCGTTGCGACACCTGCGGTGTCGGGTTTAATCGAAGGGATGGTCTGAGGTTACATATGAGAGTGCACGAAAAGACTGGTAGTAGAGGTTTGAAAGAGTGTTCTTGTCAAGTTTGTGGGGAGAAGTTTCCGAATCATTCGACTTTGGTGATCCATAGGAACAGAATGCATAAAGATGGGAGGCAGTATACGTGTCACATTTGTAACAGATCAATGATTTCGACGAGATCGCTCGAGTGGCATATGTCGCATATTCATAACGAATCGATACCAGGTATTAATCGCGATGAATCTGATCTGCCCGAGAAAAGGCGAGTTTCCTGCTATCATTGCAACAAGACCTTCAAGACGGAACTGATTCTCCGCACACACATAAAAAATACGCACATGGAGAAGGATCCATTGAAATGTCCCGACTGTGAGGATATTTTTACATCTGAAGTACGTCTACGTCATCATATGATGGTCGTGCACAATCATCTCGAGGGTACTTTGGCATGTCCTCACTGTTCGAAGCGATTCGTGAATCAATTAAGGCTAAAGACTCACATGATTTCTCATTCTGAGGAAAGACCATATACCTGTGAGATCTGTGGTTTTAATTTAAAAACTAAGATTCAATTAATCAAGCATCATCAAAACCGACACAGCGACGAGAGACCTCTGCAGTGCAGGTATTGTCCTTGGCGATGCAAGCAAGTGAGTGCCCTCGTTTGCCACGAGCGCACGCATACCAACGAACGTCCATATTCATGCAGCGTATGTCGGCAACGCTTCAAGTATCTCGGCGATAAAAATAAGCACGAACGTCGTCATGAGAGCCTTGGTGGTTCAGGCTTCAAGCGTATCGTACCTGGAAGGAATATCAAACCGAAAATGCGCGCCGAGGACTCCTCCGGATCGGAACAGGAACAAGGTTTGCTCAAGAACTCAACGAGTCAACACAATATCCAAGTTACCGAAGAGCGATACGAAGAGCAACAGGAAGGACAATATGATCAGAAATTTCAAGAAGAACAAATGGTCAAATTCGATCAAGATCGGATCGTTAAGTTTGAGGGTCAAGAGGTATACGATCAAGTATACGAGCAGAATTATGAAGAAACTTCGAGAGAGGCATCGGAAGCAACCGAAGTAATTATGAACATGGAGGATTCCAATGTGTATACGGAAGAGGTTACGGCCGATAACATAGAATCTGGTACGGAGATCATGACAGACGAAATGATGACAAATGATATTCTGCAATCTGGCACTGCCGTGATGCATCTAAGGAATGATGATTCGGGCAAGATTCAAGTGATACCAGTAATGCTTTCCTTGCCCGATCTGTCCGACGCAAATGCCGAAGTTAATCTCGAGACTGCGTCAATCATGTATAATAATTAG
Protein Sequence: MPNPEIKRDHNYSELKASQHTNNSNGGIINKTFKTGSVMGQIKDIDELKKITPRVRLQDTESLNELTRISSLNNNSGKLQQNNMSFLERTQQELRKYCRTCAGLKMPLVDIFSEKGIKLRLSQQIKHLEVDPHDSLSTQMCMDCICDLRMSYKFFMQIKKAEIKLKSIHVNLTADNSAKKVATDESLKTKEEKQLSYSDIKHGYQLSSTSIQQNLSLLSTKQENQTTHGNQTDNSVPKICAIFSLKNESKIGSRKETEAIKKNENKKEEQKVIVEDEKEEEMVEELEEIEEGEQNEKDEEDEEIEEEEKMGGGIFEEVAEGEDEESIEEFDPEDPALLENEEEEKEESSRSPTTIYKYDMTAKSYVRMEESQEGFFFKSGTSQISESEGENQKEGMRQPNILKRKLIMPMTMIKNGDDDVQSGIGEYKMQKLDTNNFLNVNSSSEEDGIMYVTVKGSKPNEILLVKVKKMDKPVESKRTMTSADIMPVERFLKRYETLTSKDFSRRPDDREQKIEEQIEEYKKKREKVLGGQSVIKYVSNNSVIEMQKEMQEEEISAKSNIEKAEEEITILKEKDERREEEEEEEEEEEKTEKDEIDENQERINDNTEEHLSKLSRLKLKWEEVKRKKESLQKELDESYSEGNLEKLAKVLGEKEENLREFQGYLKQRKIVLTRLKDEDIISLYEDRFSTTLKSSSKSLPDLIDTQLPIDISEKYYLECDYCSETFSNRDVLEEHLKSHDYRILHCCDDCGEEFQTNKAKKNHSVICVRKLICKYCNAILDSRGKKRQHEQKHVDALYGQLCEVCGERFKHQGTLDQHLKTQHTSLEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHKIRKHQPVGNKRECQVCRKLVPFYSLSKHMHTHKAYSIECPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTGSRGLKECSCQVCGEKFPNHSTLVIHRNRMHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESIPGINRDESDLPEKRRVSCYHCNKTFKTELILRTHIKNTHMEKDPLKCPDCEDIFTSEVRLRHHMMVVHNHLEGTLACPHCSKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPGRNIKPKMRAEDSSGSEQEQGLLKNSTSQHNIQVTEERYEEQQEGQYDQKFQEEQMVKFDQDRIVKFEGQEVYDQVYEQNYEETSREASEATEVIMNMEDSNVYTEEVTADNIESGTEIMTDEMMTNDILQSGTAVMHLRNDDSGKIQVIPVMLSLPDLSDANAEVNLETASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01228537;
90% Identity: iTF_01228537;
80% Identity: -