Basic Information

Insect: Pogonomyrmex californicus
Gene Symbol: -
Assembly: GCA_017141365.1
Location: JAEVLP010005107.1:183131-188366[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00041 0.061 14.7 4.1 1 23 235 257 235 257 0.97

2 11 1.3e-05 0.0019 19.5 1.5 1 23 263 285 263 285 0.98

3 11 0.00064 0.094 14.1 3.6 1 23 291 314 291 314 0.95

4 11 0.013 1.9 10.0 5.2 1 21 320 340 320 342 0.95

5 11 0.00013 0.019 16.3 1.9 1 23 348 370 348 370 0.99

6 11 7.3e-05 0.011 17.1 0.8 1 23 376 398 376 398 0.98

7 11 0.00066 0.098 14.1 0.8 1 23 406 429 406 429 0.97

8 11 3.5e-05 0.0052 18.1 2.6 2 23 436 457 435 457 0.97

9 11 0.00013 0.019 16.3 0.3 1 23 463 485 463 485 0.99

10 11 0.0034 0.5 11.8 7.3 1 19 491 509 491 514 0.91

11 11 1.1e-07 1.7e-05 25.9 1.3 1 23 528 550 528 550 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00041	0.061	14.7	4.1	1	23	235	257	235	257	0.97
2	11	1.3e-05	0.0019	19.5	1.5	1	23	263	285	263	285	0.98
3	11	0.00064	0.094	14.1	3.6	1	23	291	314	291	314	0.95
4	11	0.013	1.9	10.0	5.2	1	21	320	340	320	342	0.95
5	11	0.00013	0.019	16.3	1.9	1	23	348	370	348	370	0.99
6	11	7.3e-05	0.011	17.1	0.8	1	23	376	398	376	398	0.98
7	11	0.00066	0.098	14.1	0.8	1	23	406	429	406	429	0.97
8	11	3.5e-05	0.0052	18.1	2.6	2	23	436	457	435	457	0.97
9	11	0.00013	0.019	16.3	0.3	1	23	463	485	463	485	0.99
10	11	0.0034	0.5	11.8	7.3	1	19	491	509	491	514	0.91
11	11	1.1e-07	1.7e-05	25.9	1.3	1	23	528	550	528	550	0.98

Sequence Information

Coding Sequence: ATGAGTAACGTAGCAACTATAAAATTGGAAGAGGGACAAGAATCTGTCACCGAGATACAAACTTACTTGGAGACATTTAATAAAGAGATAGAAGGAGGACAGGGAGAACAACTACAGCATGTGCAATTACAACAAGTGGAGGGACTTTCTGGTGGAGAGGAAGGTGGAACGTATTTTGTTGATCAATCTGGTCAGTATTATTACCAGGCAAATAGTGACGAAACACCTGTAATGACACAGGTACAGATACAGGAAGTAGAAGAGACTGATGTACAGAATGAAGGTGAAGGAACTCAGGATGAACAATATCAGGAGATTGAAGAACTTGAGAATGCTGAAGGTGATGAAGATGGACAAACCAATGGTGAAACCAATCAAGTTGTAATTAATTCTGGCGATGCATATCAGACTGTCACGATTGTACCATCTGATACAAATCCTGGAGAAGTCAGTTACGTTCTGATAGTTCAACAACCTGAATCCGAAGAAAAGGAGAGTAAACCTACGGAAGATGAAACAACAACAATGGCAGCAACAGCGGCAACAGCCGAGGGAGAGGAAGCAGAGGGTGAACAAGATCTCACTGTGTATGATTTTGAAGACAATGAGGACAATGAAGCCCCAGTAGAATCCGAGGCAGAAGATGATAAGACTAAAATTATTAAGTTTCTCCCTAAAAAATCTCAAACTGTGACACAAGCTCATATGTGCAATTACTGCAACTATACTAGCCCAAAACGGTATCTCTTATCACGACATATGAAATCTCATTCAGAAGAAAGACCTCATAAATGTAGTGTTTGTGAACGAGGATTTAAAACTTTAGCTTCACTTCAGAATCACGTCAACACTCATACTGGGACCAAGCCTCATCATTGCAAATATTGTGAGAGTGCATTTACCACTTCTGGTGAACTTGTAAGACATGTTCGGTACAGACACACTCATGAAAAACCACATAAATGTCATGAATGCGATTATGCATCTGTTGAGTTATCAAAATTGAAAAGACATATTAGATGTCATACAGGCGAACGACCCTATCAGTGTCCACATTGTACATATGCAAGTCCAGATACATTTAAACTAAAACGCCATCTTCGCATTCACACTGGAGAAAAACCATATGAATGTGATTTCTGTCAAGCGAGATTTACTCAATCCAACAGTTTGAAAGCACATAAATTGATACACAATGTAGGCGATAAACCAGTATTTCAATGCGAATTATGTCCAGCTACATGTGGCAGAAAAACGGATCTTAGAATTCATGTGCAAAAGTTACATACTTCTGATAAGCCGTTAAAATGTAAACGTTGTGGAAAAACATTCCCAGATAGATATAGCTATAAGTTACATAGCAAAACTCACGAAGGAGAGAAATGTTATAAATGCGATCTATGTCCTTATGCATCTATATCAGCGCGTCATTTGGAGAGCCATATGCTTATTCATACTGATCAGAAACCGTATCAATGTGATCATTGCTTTCAATCATTTAGACAAAAACAATTACTTAAACGGCATTGCAATCTTTATCATAATCCCTCTTATGTTCCTCCACCACCACAAGAAAAAACGCATCAATGCCCCGAATGTGAAAGGGCATTTAGACATAAAGGTAATCTTATTCGACACATGGCTGTTCATGATCCAGAATCATCTCTGCAAGAAAAACAACAGGCTCTTAAAATCGGTAGACAAAAGAAAATTCAAATCATTGACGGCCAACGTGTTGAAGTAATGACAGGTGATTTAGCTTCTAAACTTAAAGGTTATGAAGATGAAGAAGAGGAAGAAGATGAAGACGATATGATGGCGGTTCAAGGCAGTGATGGTCAGCAATATGTCGTATTAGAAGTGATTCAATTAGCGGACAATCAGGGAACTGATCAGATGGCTGTTGTTGCAAGTGAAGATGGAGAGTTGGTAATGCAAGATCCTTTAACTCAAGAAAATAGTTTAGTGACAGCAACAGGAGAAGAAGTTGATGAAGCAGATGAAGATATAGAAATGAAAGATCTAAAAATCGAACCTCCTACTCCATCTAAATCTTCGACGCAAAGCTCACAAAATGATTCTAAGTTACAAAAAGAAATGGAAACTTGTTTCGGATTTGATGAAGAGGAAGAAGAAGAAGAAAGCGCTAATAATATAAACATGCTACATACAATTTCGTAA
Protein Sequence: MSNVATIKLEEGQESVTEIQTYLETFNKEIEGGQGEQLQHVQLQQVEGLSGGEEGGTYFVDQSGQYYYQANSDETPVMTQVQIQEVEETDVQNEGEGTQDEQYQEIEELENAEGDEDGQTNGETNQVVINSGDAYQTVTIVPSDTNPGEVSYVLIVQQPESEEKESKPTEDETTTMAATAATAEGEEAEGEQDLTVYDFEDNEDNEAPVESEAEDDKTKIIKFLPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKYCESAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDFCQARFTQSNSLKAHKLIHNVGDKPVFQCELCPATCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSYKLHSKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCFQSFRQKQLLKRHCNLYHNPSYVPPPPQEKTHQCPECERAFRHKGNLIRHMAVHDPESSLQEKQQALKIGRQKKIQIIDGQRVEVMTGDLASKLKGYEDEEEEEDEDDMMAVQGSDGQQYVVLEVIQLADNQGTDQMAVVASEDGELVMQDPLTQENSLVTATGEEVDEADEDIEMKDLKIEPPTPSKSSTQSSQNDSKLQKEMETCFGFDEEEEEEESANNINMLHTIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00730251;
90% Identity: iTF_01421078;
80% Identity: iTF_01228538;