Pcal017754.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonomyrmex californicus
Gene Symbol
-
Assembly
GCA_017141365.1
Location
JAEVLP010004888.1:28625-31684[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.018 2.6 9.6 5.4 3 23 400 420 398 420 0.95
2 15 0.016 2.3 9.7 3.0 3 23 430 451 430 451 0.96
3 15 0.00018 0.027 15.8 0.3 2 23 458 479 457 479 0.96
4 15 1.3e-05 0.0019 19.4 3.0 1 23 485 507 485 507 0.96
5 15 0.00031 0.046 15.1 3.8 1 23 516 538 516 538 0.97
6 15 3e-06 0.00045 21.4 2.6 1 23 544 566 544 566 0.98
7 15 4.9e-07 7.3e-05 23.9 1.0 1 23 571 593 571 593 0.98
8 15 0.004 0.59 11.6 4.0 1 23 600 622 600 622 0.99
9 15 0.00019 0.028 15.8 0.2 2 23 642 663 641 663 0.97
10 15 2.9e-05 0.0043 18.3 0.6 1 23 669 692 669 692 0.97
11 15 0.018 2.7 9.5 1.6 1 23 698 720 698 720 0.96
12 15 0.00024 0.035 15.5 3.2 1 23 726 748 726 748 0.98
13 15 3.9e-06 0.00057 21.1 5.1 1 23 754 776 754 776 0.98
14 15 1.9e-05 0.0029 18.9 0.4 1 21 782 802 782 803 0.94
15 15 9.2 1.4e+03 1.0 0.4 8 23 814 829 813 829 0.89

Sequence Information

Coding Sequence
ATGAGGATCGTTTGCGCCGCATCAAATTGCAAATATTCCTCAAAAAGCGAGGATTCGTCGAACGTCATTTTTATCAATTTTCCCAACGATGACACAGCCAAAACATGGGCGGAGTGTTGCGGCAGATCAGACTTGACCACAAAGTCGAATGCAGAATTGCATTCAAATCATTACATTTGTTCCCATCACATTGAAGATCGCCATTACGTAAGCAAAACCGCTCCCATTGTTATAGAAGAAGGTACCGTTCCTACTTTATTTGGGAATGATTCGAGTATCGGCAGTGACAATTCAATAAATACGTTTGATAAATCACAGCATCTGCAAGAAGTAGGCGATAGCATGCCTCTAATTTATTACAACGAAAATGTCGAGATGGACAATGTCAGCATTAGACTCGACAATTTATGTCGGATCTGTGGTGAATCTACTCTGAATGGAACAGATATTTTTGCTACCAAAGGTATTGAGCTTAGATTGAAGGAAAGGATAAATTTGCATATGCCTATCTCAATCGACATAGATGATTGTTTACCACAAAAAATGTGCTCCGATTGCTGCAATAAATTGGAAATTGCACATTCATTAGTTGTTTCATGTTTGAAAACTGATATACGTTTGAAGAGATTTTTAAATATTGAGAAAGAGTCAGGATATGAGAATAAATATAGTGCATTGGTTGACGAATGTTCATTAGAGATAGATCAAGAGATGTGCATTGATGATAATATGCATGCTGATTCATTCATCATTAATAAGTTGATAAATCCTGACTCGGAAACAAGTTTAAGAGGATTAGAAAATGAAGAAATACGAAGTAATAATTGTCAGACCATTGCAAAGAGTGTCATGCCACTGAGGACTACAATCCAAATTTGTAGTGATGTTAATGTTAGAAGTGACATGATTGTCACGGAAGAAATATTAAAAGTTCTACAAGATAAAATTCAGAATGAAAATTCTAGCTTTTTATGTCTACAATGTCAAACTTTTTGTAAAACTTGGGAAATATTTGAGAATCATAAGATATTTTGTACCAAGGAACGGAATGTCTCAAAACATATAAATATATCTAGAATTACAGAGAATGAAAAGTGTGAGAATGAGCCCAATCGCAAAGTAGAAAATTCACAGATATGTAATGAGGAATTTGATGGCAAACAAATTATCGAAAAAGCTACTTGTGAATCAGTGCATTGTTCTATTTGCAATCGGACATTTAAAAGTCAGCAAGATTATGATAATCACAAATGTCTTCACGGAAATTTCACTGAAACGAGTAAATGGTGTGGCCATTGCAAAAAAATATATCATAATAAAAAAGATTTGTTAATTCATATCATGGAATCGCACGAGGGGCGATTGTTACTTAAATGTTCTACTTGTGACAAGACATATGAAAAATGGTCTAGTTTAGATATTCACGAAGCTACTCATAAAATGGATAAACCTTATCTTTGCGATCTATGTGGAAAACGCTTCAAGCATTCCAATAATCTAAGAGGTCATAAAAGAATTCACTTGGATGAATCTATAAAGAAGAGACATGTATGTGATATCTGTAGCAATGCGTTCAGATCACGGTTTCATCTGCGAGAACATATGAATCAACATAATGATAACAGACCCTATTCTTGCGAACAATGCGGGAAAGCTTTCTGCAAGAGAATTCAATTGCGGCAACATATGTTATCACATGGTTCTAACAGGCATGTGTGTCCGATATGCGGTGCAACGTTTAATCGCAGAGGAAACATGAATACGCACATGAAACGGCATAATAACGGAAACGAAAGATACACATGCAGTGTTTGTGCATACAAATGTAAGTCCATGAGTGAATTGAAGATACATAGAAAAAAGCATACCGAAGAGGAAATAACGGACAGCATTAAGAAAAAATGCACCGATAAACAAATATGGCGTTGCAAGATTTGTAATAAAATATTCCCGAAGCGAGCTGTCCTGATGAATCATGAGCGCGTGCACGGGAGCGATAAGTTTTACGAGTGCGATGAATGTGGCAAGAAATTAGCGAGTAAAAGCTCGCTGATATATCACAAGAAGTCGATGCATCTAAGGGAGAAGTTGCACATGTGTCATTATTGCGGAGATTCGTTTGTCTCGAGAGAAGCGCGGCTGATCCACGAGAGGATACACACTGGTGAACGTCCCTACGTTTGCAAAGTGTGCGATACGCGATACAGGTGCTCCAGTAATCTCAGTCAGCACATGAAGATTCACATAGGTCTGAAGCCGCACAAGTGCCATTACTGTAACAAAGGTTTTACGCGCAAGGGTACACTAACCGTGCACGAGAGAATCCACACGGGCGTTAAGCCATATCCTTGCGAGACATGTGGTAAAAGCTTCTCGCAGAAAAACGACATGTTGAAACACGCTAAACGCACAACGGCAGATCGATGCGCAGCATCCACGAGATCTTTAAATAGGAAAGAGAATACGTTAAAGCATATCATGGTGCATGAGCAAGATACCTTGATGACTTCGAATGTCAATTCGTCACATATTCTTCAAGTTTATGTCGATATTGGCTCTTCGGAAATTAAGTAA
Protein Sequence
MRIVCAASNCKYSSKSEDSSNVIFINFPNDDTAKTWAECCGRSDLTTKSNAELHSNHYICSHHIEDRHYVSKTAPIVIEEGTVPTLFGNDSSIGSDNSINTFDKSQHLQEVGDSMPLIYYNENVEMDNVSIRLDNLCRICGESTLNGTDIFATKGIELRLKERINLHMPISIDIDDCLPQKMCSDCCNKLEIAHSLVVSCLKTDIRLKRFLNIEKESGYENKYSALVDECSLEIDQEMCIDDNMHADSFIINKLINPDSETSLRGLENEEIRSNNCQTIAKSVMPLRTTIQICSDVNVRSDMIVTEEILKVLQDKIQNENSSFLCLQCQTFCKTWEIFENHKIFCTKERNVSKHINISRITENEKCENEPNRKVENSQICNEEFDGKQIIEKATCESVHCSICNRTFKSQQDYDNHKCLHGNFTETSKWCGHCKKIYHNKKDLLIHIMESHEGRLLLKCSTCDKTYEKWSSLDIHEATHKMDKPYLCDLCGKRFKHSNNLRGHKRIHLDESIKKRHVCDICSNAFRSRFHLREHMNQHNDNRPYSCEQCGKAFCKRIQLRQHMLSHGSNRHVCPICGATFNRRGNMNTHMKRHNNGNERYTCSVCAYKCKSMSELKIHRKKHTEEEITDSIKKKCTDKQIWRCKICNKIFPKRAVLMNHERVHGSDKFYECDECGKKLASKSSLIYHKKSMHLREKLHMCHYCGDSFVSREARLIHERIHTGERPYVCKVCDTRYRCSSNLSQHMKIHIGLKPHKCHYCNKGFTRKGTLTVHERIHTGVKPYPCETCGKSFSQKNDMLKHAKRTTADRCAASTRSLNRKENTLKHIMVHEQDTLMTSNVNSSHILQVYVDIGSSEIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01229080;
90% Identity
iTF_01228529;
80% Identity
iTF_01229080;