Basic Information

Insect: Pogonomyrmex californicus
Gene Symbol: Snai1
Assembly: GCA_017141365.1
Location: JAEVLP010004763.1:20701-24081[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.7 1e+03 1.4 0.1 3 11 65 73 63 80 0.65

2 13 0.00063 0.094 14.1 0.2 1 23 241 263 241 263 0.94

3 13 1.4e-05 0.0021 19.3 1.2 1 23 271 293 271 293 0.98

4 13 1.9e-05 0.0029 18.9 0.3 2 23 301 322 300 322 0.97

5 13 7.7e-06 0.0011 20.1 1.3 1 23 328 350 328 350 0.99

6 13 3.2e-05 0.0048 18.2 2.3 1 23 357 379 357 379 0.98

7 13 2.1e-06 0.00031 21.9 1.7 1 23 385 407 385 407 0.93

8 13 7.8e-06 0.0012 20.1 0.2 1 23 413 435 413 435 0.98

9 13 6e-07 8.9e-05 23.6 1.2 1 23 441 464 441 464 0.96

10 13 3.1e-06 0.00047 21.4 0.5 1 23 470 493 470 493 0.96

11 13 1.6e-05 0.0024 19.1 2.5 1 23 499 521 499 521 0.99

12 13 7.8e-05 0.012 17.0 0.4 1 23 527 549 527 549 0.94

13 13 0.00057 0.085 14.3 0.1 1 23 555 579 555 579 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.7	1e+03	1.4	0.1	3	11	65	73	63	80	0.65
2	13	0.00063	0.094	14.1	0.2	1	23	241	263	241	263	0.94
3	13	1.4e-05	0.0021	19.3	1.2	1	23	271	293	271	293	0.98
4	13	1.9e-05	0.0029	18.9	0.3	2	23	301	322	300	322	0.97
5	13	7.7e-06	0.0011	20.1	1.3	1	23	328	350	328	350	0.99
6	13	3.2e-05	0.0048	18.2	2.3	1	23	357	379	357	379	0.98
7	13	2.1e-06	0.00031	21.9	1.7	1	23	385	407	385	407	0.93
8	13	7.8e-06	0.0012	20.1	0.2	1	23	413	435	413	435	0.98
9	13	6e-07	8.9e-05	23.6	1.2	1	23	441	464	441	464	0.96
10	13	3.1e-06	0.00047	21.4	0.5	1	23	470	493	470	493	0.96
11	13	1.6e-05	0.0024	19.1	2.5	1	23	499	521	499	521	0.99
12	13	7.8e-05	0.012	17.0	0.4	1	23	527	549	527	549	0.94
13	13	0.00057	0.085	14.3	0.1	1	23	555	579	555	579	0.92

Sequence Information

Coding Sequence: ATGACGGCTGACTCTGATAAGGATTGCACACAGTGCTTAGTGTGCAATAGTAAAATTGCAGTATCCAGTAGAAACAGTGTACGCATCTTCAATGATTCTAGTTGCACTTCGTCTGAGAAACCACTTGCGCATGTTATAGCAGCTGTTTTAGAAATTGATATAAATGAAAACTCTGTACATTCTCTCGTCATCTGTAAAAAATGTTTTAAATTGTTCAATGAGGTGGATGAACTTGAAAATAAATTACATGAAATCAAAATAGATTTACGTAGTAATTATAAAAAGACAATTGAAGTTAAGAAACTATGTGATATACTTCAAAATGAAGAAGAATATAACGATCATGATTATACAGACAACGCAGATAATCAAAGCACTGTAATAGAGGAAATACAAAAAACTAAAAATATTAAAATAAAGAGGAATAAGCAAGAACAGGAAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGATATGCTGGTTGAACAAGATGATAGTTTATTTACAGAAGTAGACGAAAGTAATAGTTCTGATGAGAAAAAAAAATCGAAGAAGAACAAAATTAAAGAAAATAGCCTTCAGGAAAATATTGTATTTAAAGAAGAATCTTTATATACTTGTTCTTTATGTTCAAATGAAGAAGAAAAAGTCGCCGGAGATGCAAAAACTATTATAGGACATATGAAAGATGTACACGATATTCGATTATATATTTGCGATGTATGTGGACAAGATTTTAGGAAGAGAAACGAGCTTTCTTTGCATCTTGATGATCATGTTGCAAAGGAAGAAGGAGATTTTCAATGTGAGATATGTAATAGAATATTTAGCAACCTGCGATTATTTCGGATTCATAAAAGAATACATTATCCACAAGTGAAATCATGGCCCTGTGATACATGTGGAAAGAGATACAATTCCAAAAATTTGTTAGATGAACACATGAACACACATACCGGTGTTCGCCCGTATGTATGTGAGACCTGCAACAAAGATTTTGCATCTAAATATACATATAAAGCACATGTAAAAACACATGAAGTACGACCTCGTCCATTCGAATGCTCTCAATGCAACAAAACATTTTTGAGCCAGCAAAATTTAACTCAACATGAACGAACGCATAATGGCGTAAAGGAATATGTATGCCATCAATGCGGTAAGGCTTTTACTTCATCTCACAATTTAGAAGTACACAATGTAGTACATACTGGATATAAACCCTTTATATGCAGAATATGTGGTAAAGCATTTGCACGTAAAGCGGAAATACGTGATCATGAGAGAACTCATACAGGTGAAAAACCTTATCAATGCGAATTCTGTGGAGCAACATTTAGTCAGAGATCGAATTTGCAATCTCATAAGCGAGCGACACATTATAATGATAAACGTTACAAATGTGACGATTGTGGAAAAGGTTTTAAAAGAAGAAGATTATTGGATTATCATATAAAAGCAGCACACACTGGTGAAAGGCCATACAAATGCGACGTATGTACAGCTACGTTTGTCTATCCTGAACATTTCAAGAAACATAGGCGTATACATACAGGCGAGAAGCCATATCTTTGTGAGGTTTGTGGTAAAGCATTCAATAGTAGAGATAACAGAAACGCTCATAGATTTATACATAGTGATAAAAAACCATATGAATGTTTGGTCTGCGGCTTGGGCTTTATGAGAAAACCATTGCTTTATGCACATATGCAAATGCAGGGTCATTTAAATGATACAATAGTAGTAAACCAACCGCGATTGACAACAGAAGATGATCAAGTAATAACTATCCCTAATAATAATACCGAACTACTGATGGAAGAAGTTGACAATGAACAGTTGAATGAAACTGAGTTGTATGTGACCGAATTGAAAGATCATGTGATCATACAACAAGAAGGTGAAGAACAGATGTACAATGAAGAGGATGTTGTTTTAAATATACCAGCAGCAGAAACTGTGAGTGGCGAAGTAGAACATCTTGTCGTTGAGAATCAGATAAATTTTGCAGAGGATGAAGCTATAGCATGCAAAACTGAAACTACTGATCAAGTAGAAGCAGTGTACACTTATAACGGAAATGAGGAGAGTGATACAATAGTTGTACCCGCAACTTCATCATTTAAAGAGGGAGAAGACAAAAATGTGCGGTTAGTGCAGATAAGATTTCCGGCCTCTGTGGATGGAGAAGGCAGGAGCTGGTTGAGTTTAGTACAAAATAATTGA
Protein Sequence: MTADSDKDCTQCLVCNSKIAVSSRNSVRIFNDSSCTSSEKPLAHVIAAVLEIDINENSVHSLVICKKCFKLFNEVDELENKLHEIKIDLRSNYKKTIEVKKLCDILQNEEEYNDHDYTDNADNQSTVIEEIQKTKNIKIKRNKQEQEEEEEEGEEEEEEEEDMLVEQDDSLFTEVDESNSSDEKKKSKKNKIKENSLQENIVFKEESLYTCSLCSNEEEKVAGDAKTIIGHMKDVHDIRLYICDVCGQDFRKRNELSLHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCDTCGKRYNSKNLLDEHMNTHTGVRPYVCETCNKDFASKYTYKAHVKTHEVRPRPFECSQCNKTFLSQQNLTQHERTHNGVKEYVCHQCGKAFTSSHNLEVHNVVHTGYKPFICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCDVCTATFVYPEHFKKHRRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGLGFMRKPLLYAHMQMQGHLNDTIVVNQPRLTTEDDQVITIPNNNTELLMEEVDNEQLNETELYVTELKDHVIIQQEGEEQMYNEEDVVLNIPAAETVSGEVEHLVVENQINFAEDEAIACKTETTDQVEAVYTYNGNEESDTIVVPATSSFKEGEDKNVRLVQIRFPASVDGEGRSWLSLVQNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00127651;
90% Identity: iTF_01228517;
80% Identity: -