Basic Information

Insect: Pogonomyrmex californicus
Gene Symbol: -
Assembly: GCA_017141365.1
Location: JAEVLP010004890.1:268822-272595[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.8e-05 0.0057 17.9 0.3 1 20 60 79 60 81 0.95

2 13 2.8e-05 0.0042 18.4 0.9 1 23 159 182 159 182 0.96

3 13 0.00015 0.022 16.1 5.0 2 23 189 211 185 211 0.95

4 13 0.00078 0.12 13.8 3.8 1 21 217 237 217 242 0.94

5 13 4.7e-08 7e-06 27.1 1.9 1 23 249 271 249 271 0.98

6 13 3.8e-05 0.0057 17.9 1.3 2 23 281 302 280 302 0.98

7 13 0.0018 0.27 12.7 1.5 3 23 310 330 308 330 0.97

8 13 3.2e-06 0.00048 21.3 2.7 1 23 336 358 336 358 0.99

9 13 5.6e-06 0.00084 20.6 1.8 1 23 364 386 364 386 0.94

10 13 0.00015 0.022 16.1 0.8 1 23 392 415 392 415 0.93

11 13 2.4e-06 0.00035 21.7 0.4 1 23 421 443 421 443 0.96

12 13 2.4e-08 3.6e-06 28.0 1.8 1 23 449 471 449 471 0.99

13 13 0.0003 0.045 15.1 1.4 5 23 481 500 478 500 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.8e-05	0.0057	17.9	0.3	1	20	60	79	60	81	0.95
2	13	2.8e-05	0.0042	18.4	0.9	1	23	159	182	159	182	0.96
3	13	0.00015	0.022	16.1	5.0	2	23	189	211	185	211	0.95
4	13	0.00078	0.12	13.8	3.8	1	21	217	237	217	242	0.94
5	13	4.7e-08	7e-06	27.1	1.9	1	23	249	271	249	271	0.98
6	13	3.8e-05	0.0057	17.9	1.3	2	23	281	302	280	302	0.98
7	13	0.0018	0.27	12.7	1.5	3	23	310	330	308	330	0.97
8	13	3.2e-06	0.00048	21.3	2.7	1	23	336	358	336	358	0.99
9	13	5.6e-06	0.00084	20.6	1.8	1	23	364	386	364	386	0.94
10	13	0.00015	0.022	16.1	0.8	1	23	392	415	392	415	0.93
11	13	2.4e-06	0.00035	21.7	0.4	1	23	421	443	421	443	0.96
12	13	2.4e-08	3.6e-06	28.0	1.8	1	23	449	471	449	471	0.99
13	13	0.0003	0.045	15.1	1.4	5	23	481	500	478	500	0.91

Sequence Information

Coding Sequence: ATGGCACAACCAGTACAAGAAATAAAAATCCTGAAGATAGAGGAATGTTCTGATTCTAACATTATAATTGAACATGGAACCACAGAAATTTTGTTCGATGAAGAGATCTCACAGGGTGAATCTGAAGTGGATAATAAGCCAGTTAATGAAAAAGATAATCTAATTATTTCTATTGATTATCAATGTGTGACGTGTCATCGTGTTTTTCCATCTAAGGATATGTTGCAGAAGCATGTAGACATGTGCAGAGAGGAAGATGATTCAACTATTATCATGGGACTTGACAATATGACAAATTATGATTCAGAAGAGGAGGACGAAGATGAAGATGATCCTCTAGCAAATTCAAATACTGAAGATTCAGATGCTAAAAGCCAAAAGAATAATAACGAAAAACCAATGATTACGCCCGTGCCGGAAACGCAATGCCATTGCTGCGCGGAAAACTTAAAGACGGCACATAGCGGCGGGAATTACAAATGTGTACATTGTGATCTCAGTTTCAAAAAGAAAGCATCTTTAGATAGACATGTTATAGTCATACACTGGAAATGCGATTTGTGCACATGCAATGAATGCGGTTCTTCCTTCCGCGACAAGAAAGCCTTAAATAAACATCGTTATACAACACATGAAGATCGCAAAATTTTTAAATGCGAGCCTTGTGACACTTATTTTTCCCGGAGTTACCACTTAAATCGGCACATAATGCAGTCTGGTTGTCACGGTAACATACTTAATATGTTCAGTTGTCAAATTTGCAAAAAAGCTTTTACACGTAAGGATAATTTGCGAGAACACTTGCGTTCTCATGCAGGAACACCGCAAAGACAAAAGAAGAAATGTAAATATTGCCCAAAGGAATTCTTTACAAACCAACAGTTGGTGATACATGAACGCATGCATACGGGAGAGCGACCGGTCCATTGCGATTTATGTCCGAAGACATTCCTTTCGTCGCTTGCGCTGAAAAAACATCGTCGGGTACATACTGGAGAAAAGCCGTTTGAATGTAAATATTGCAAGAGGAAATTTGCCGCTCGTGAGACTTTGAATCGACATCAACGGACACATACGGGCGAGAGACCGCATGTATGTCAATATTGTGGTAAATCATTTATACAGGCAGCGCAATTGAGAGCACATGTGTTCCATCATACTGGAGAAAATGGATTCTCTTGCGATGTATGCGGCAAGGCGTTTAATCGGAAAGCGCGTATGAATATCCACAAGAAGTTTGTCCACGAAGGAGCGATCCCATTCACTTGTAAAGTCTGTGACAAGGGTTTTACTCGAAGGGAGGATTTGGTGAAGCACGCGCTATTGCACACTGGCGTTAAACCGTTCCAGTGCGATAAGTGTAAGAAAGCTTTCTCCACAAAGTCATCATTACAGGCTCATCTTAACACCCATAGGCGTGAACCACCCCAATCGTGCATCGAGTGCAACCGAGTATTTATCCGGCAAGATTGCCTAATGCGTCACATTCGGGCGAAGCATCGGGAATTACTGGAAGATGTAATGAATGAGGTCGAGAAAAAACATTTGCAAAAGCAGTTGCATAACATTGCGGCGATCGCTGCTGAGAAAACGAAAACTGGCGAGTCCAAAAGACTTTCCACCGATGAGTTGTTGAAGGCCATTATAGATCTTTTGAGAATACTTATCGACGAGGAAACGTTACAGCTATTTGGTTGGCCAGAAGCTCCGATACAAGATATTCTTGAAGCCGTGATTAGAAGATGCGGACAAGAGCCAGTTACAGCCGAATCTAATATGATGTTTACTGATAGGCTACGACAAAATATTAAGCTTTTGTTCACTGTCGTTACGAATACTGTGACTGACGAGACAGTAAAATCCCTCCTGACAACGAAAACGGTGGACGATGTTATCCTCCACGTTTTAGAAATATCTAAATAA
Protein Sequence: MAQPVQEIKILKIEECSDSNIIIEHGTTEILFDEEISQGESEVDNKPVNEKDNLIISIDYQCVTCHRVFPSKDMLQKHVDMCREEDDSTIIMGLDNMTNYDSEEEDEDEDDPLANSNTEDSDAKSQKNNNEKPMITPVPETQCHCCAENLKTAHSGGNYKCVHCDLSFKKKASLDRHVIVIHWKCDLCTCNECGSSFRDKKALNKHRYTTHEDRKIFKCEPCDTYFSRSYHLNRHIMQSGCHGNILNMFSCQICKKAFTRKDNLREHLRSHAGTPQRQKKKCKYCPKEFFTNQQLVIHERMHTGERPVHCDLCPKTFLSSLALKKHRRVHTGEKPFECKYCKRKFAARETLNRHQRTHTGERPHVCQYCGKSFIQAAQLRAHVFHHTGENGFSCDVCGKAFNRKARMNIHKKFVHEGAIPFTCKVCDKGFTRREDLVKHALLHTGVKPFQCDKCKKAFSTKSSLQAHLNTHRREPPQSCIECNRVFIRQDCLMRHIRAKHRELLEDVMNEVEKKHLQKQLHNIAAIAAEKTKTGESKRLSTDELLKAIIDLLRILIDEETLQLFGWPEAPIQDILEAVIRRCGQEPVTAESNMMFTDRLRQNIKLLFTVVTNTVTDETVKSLLTTKTVDDVILHVLEISK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423083;
90% Identity: iTF_01228518;
80% Identity: -