Pcal001880.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- gl
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010004461.1:43977-46675[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2e-05 0.041 14.8 0.4 19 41 88 107 85 109 0.92 2 5 0.12 2.4e+02 2.7 0.8 17 36 114 134 108 136 0.73 3 5 0.0088 18 6.4 0.7 6 38 132 164 127 164 0.79 4 5 2.4e-05 0.049 14.6 0.4 18 40 171 190 167 193 0.89 5 5 0.23 4.7e+02 1.8 3.9 5 40 187 218 183 220 0.81
Sequence Information
- Coding Sequence
- ATGACGATAAATGTGATTAACTTGCTATCTGGATTTATTTATGGCAATCCAGTAGAGGTAGCAGCGCAAACGACCGCGAGGGTGAATCAAGGTGTGCCGGCCAATAGCGGTCTGATCGGTCATCCCCATTCCCACCCCCAGCCGCCGCATCATAGTGGTGGTCGGCTGCAACTCGGGGGTGAACACACACTCTGCGTGAATACCGCAGGTCCGGGAGGTGCGGGCGGTGTCACCCTCGAAGATAATGGCAGACCGAATCTATGTAGGATATGCGGCAAATCATACGCCAGACCTAGTACTCTCAAAACTCACCTGCGCACCCATTCTGGAGAGAAGCCGTTCAGGTGTCATGCGTGCTCAAAGGCATTTAGTCAAGCAGCAAATTTGACTGCACATGCGAGAACGCATTCCGGTGAAAAACCTTTTCGATGTCCGGTATGTGACAGGAGATTTTCACAAAGCAGTTCAGTAACCACGCATATGAGAACGCATTCAGGAGAACGGCCTTACAGATGTCGATTCTGCAAAAAGGCATTCTCCGACAGTTCGACGCTCACCAAGCATTTGCGTATACACTCCGGCGAGAAACCGTACCAATGTAAGCTGTGTCTGCTTAGATTCAGTCAGAGCGGTAATCTCAATAGGCATATGAGAGTCCACGGCAGTTCCCTGACGTGA
- Protein Sequence
- MTINVINLLSGFIYGNPVEVAAQTTARVNQGVPANSGLIGHPHSHPQPPHHSGGRLQLGGEHTLCVNTAGPGGAGGVTLEDNGRPNLCRICGKSYARPSTLKTHLRTHSGEKPFRCHACSKAFSQAANLTAHARTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRFCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGSSLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229221;
- 90% Identity
- iTF_01229221;
- 80% Identity
- iTF_01229221;