Pcal025156.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- -
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010000993.1:3979-7786[+]
Transcription Factor Domain
- TF Family
- CSRNP_N
- Domain
- CSRNP_N domain
- PFAM
- PF16019
- TF Group
- Unclassified Structure
- Description
- This presumed domain is found at the N-terminus of cysteine/serine-rich nuclear proteins. These proteins act as transcriptional activators [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.48 8.3e+03 -2.6 0.1 92 145 43 91 13 105 0.43 2 4 2 3.4e+04 -5.3 6.6 93 139 103 150 35 168 0.60 3 4 0.19 3.3e+03 -1.3 1.5 94 140 421 469 404 504 0.54 4 4 1.1e-12 1.9e-08 35.4 0.3 1 28 785 812 785 812 0.96
Sequence Information
- Coding Sequence
- ATGGCAGAAACACCCGAGATGGAATCGCCTTTGGCCCGTCAGGACTGTTTCGTTGAGGCCCAAGAGGATTCCACCTCAGTGGAGGCCGATACGGAAGACGTGTCAACATCGGACGGAACGACATCAATGACGACAACAACGGCAATACCGGATACTATCGACGACGATGACTATGCGGCACGTCCATCCGTCCTGCGAGATTCGCGTAAGGACTTGATGGTAATGTGCGAGAGATTGGATGAGAAATCCGAAACCGAGGGATCCGAAGCAAGACAATCGAGTGATTATCCTTGTCTCCCAAAACTGGAGGAGGATCAAGTCGAAGAGGAGAAGGGTCAGATCGGGGAGAAGGAGGATCAGGAGAGACAGGAAGAGGAGGAAGAGAGGAAGGCAAAAATAGGTCTAACGATGGGGAAGAAAATCAGTGAGATCGAGAGAAACGAGAAGGACGAGTTCGGTGCGAAATTGATGGAAGATTCTCTTCAGAAACTTGAAGAGTCGCCGAAGACGGCTGAGTTTCAGAATCACGACATCGAAGAGTTCTCGGGGGTGCAAGAGAGCCAGATAGGGACGTCCGCATCATCGGACGTCTCCAGAAAGAGGTCGGCCGCGGATGATTTTTTGCCGATTGGTACGGAGGCCAAGAGGATCGGCATTGAAATCTCGGAGGAGCAAGCGAATCAGCTGAAAAACGATATTAGGAGGCTGTCGCCGGTGTTAGTGAGCCTGCGGGAGAGGACCCTGGGCGAAGTGTCCCTGACCTCGGAGTCCTATCTCTTCGGGAACGATGTTGACGGTAGGATAATTTCAAGATGCAACGACGTTCCGGCAGAATCTTTTGTGGCGAATGATTCCAAGATTCATGATGTTGATCAGAACTGTGAGAAGCAGGATATCGGCGAGGAGAAGAAAGAAACGATCGTCAGGATTGGTGTAAGTTCTTTGGAGTGCACGAGCAGCGACAACGTTGGAGACACGTCGAATTGCGCGAGTAAAAAAATGGATTGCGAACACGAGGAGGAGATTACGACACTTGGCGTTGACGTAGCTTCTGTTGTACTGTCGAAAGGTGACGATTTGGACGGCACAACGGAGTCGCGTCAAGACGATGTCAGAGACACAAACGTGATCACAAACGCTGAAAGTGCGCTTTGCACTCCGACGAAAAAGTGTGTTGTTGATACGACGATACCATCAAGTCCTATTTGTCGAAATTTAACCGTGGTGCTGAATCGTATCGAAGAGAAAGATATAAAGAAAAGGAACGATCAAATGGACAGAGACATCACCGAGAATATATGGGACTGTGTCGTTGAGGAGAATTTGCCTTCCAATAGAAGAAGAGATTTCGTCGAGGAGGAGCGTGATTCGGTTGTTGAATCTTGTGAATCTGAAGAAGCCCAGGAGAAGAACGCGAAGAAGCAACGATGGCAAAGCGATTCCTCTCCAATAACCAGGTCAAGGAAATGCGAGCTGACAGAGAACGGAACTTGCAGTCCGGATAGTGGATTGGTCCTGAAGAAGTGCAAGGTGGTGCTGGAGAGAATCGGTGAAATCCCGGGACATTCGTCACAAGGAGAGAACGCCGAGGAAAACGGAATCATAAGAGAGTTTGAGAAAGATGACGAGTCTGCGCCTGTAGCGATAATCGGCAAGCTGGAAGAGGATGAGGAGGTGGTACTGGCGAGCTCGTCGCTTACGGCTGAAGATAGCCGCGCGTCTAACGAGCTGGACTCATCGGAGACGATGCCAAGCTCGCCAGAGGAAGCACCAGAAGCATCGATAGAAGTCGCTGAAGGCGTCGATACCGAGACAGAAACGGAAACCGGCTCTGATAGTTCGGAAGTATCACCCATCACTAGCATTCGTCACGAGCTACGCGACGTCGACATGGCGCCCGATCAACTACCCTGTTCCGAGGGAGTCGCTCTGTGCTGTGTGGAAGCGATGGCGCCGATTATGACGAGATTGGAGGCCGAACGGCCGGAAGCGTATACGGAGGACTCTGCTGAGAGTTTGGCCTTGGCGACTGGCGCCAGGGACGAGGTCAGATCCGACGGGAGTGATTCCGGTCTGGGGAATGAAATCCCCGGTGACTCTGGACCAGCGCCCGCACCGGAAAGCGACTCGGAGACATCCTTCCTCGACAGGTTGCCGGACGACATCCTCTCCGACAAGGAGAAAGGCGTAAACCAGTTGGACAGCTACGCGCCGTCCTCGGGTGCGTCTGGTGCACCAGGTCAGCTACCTCTGACGAGCTTTCAAACACTTCCGGCCAAAAGCAACCTGAAGCGCAGGCTGACCGATTGCATGGAGGGTGACGAGTCACGGAGCAACGTCGACGAGCCCGTGAAAAAGAAGCGCAACATCCAGTTCGATGCAGTGACAGTCTATTACTTCCCTCGGGCGCAGGGCTTCACCTGCGTACCTTCTCAA
- Protein Sequence
- MAETPEMESPLARQDCFVEAQEDSTSVEADTEDVSTSDGTTSMTTTTAIPDTIDDDDYAARPSVLRDSRKDLMVMCERLDEKSETEGSEARQSSDYPCLPKLEEDQVEEEKGQIGEKEDQERQEEEEERKAKIGLTMGKKISEIERNEKDEFGAKLMEDSLQKLEESPKTAEFQNHDIEEFSGVQESQIGTSASSDVSRKRSAADDFLPIGTEAKRIGIEISEEQANQLKNDIRRLSPVLVSLRERTLGEVSLTSESYLFGNDVDGRIISRCNDVPAESFVANDSKIHDVDQNCEKQDIGEEKKETIVRIGVSSLECTSSDNVGDTSNCASKKMDCEHEEEITTLGVDVASVVLSKGDDLDGTTESRQDDVRDTNVITNAESALCTPTKKCVVDTTIPSSPICRNLTVVLNRIEEKDIKKRNDQMDRDITENIWDCVVEENLPSNRRRDFVEEERDSVVESCESEEAQEKNAKKQRWQSDSSPITRSRKCELTENGTCSPDSGLVLKKCKVVLERIGEIPGHSSQGENAEENGIIREFEKDDESAPVAIIGKLEEDEEVVLASSSLTAEDSRASNELDSSETMPSSPEEAPEASIEVAEGVDTETETETGSDSSEVSPITSIRHELRDVDMAPDQLPCSEGVALCCVEAMAPIMTRLEAERPEAYTEDSAESLALATGARDEVRSDGSDSGLGNEIPGDSGPAPAPESDSETSFLDRLPDDILSDKEKGVNQLDSYAPSSGASGAPGQLPLTSFQTLPAKSNLKRRLTDCMEGDESRSNVDEPVKKKRNIQFDAVTVYYFPRAQGFTCVPSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -