Pcal016241.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- -
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010004711.1:57437-58369[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.023 1.1e+02 3.5 0.0 4 28 12 36 11 38 0.92 2 3 0.53 2.6e+03 -0.9 0.0 26 36 201 212 199 219 0.81 3 3 9e-07 0.0044 17.6 0.0 4 35 272 304 270 307 0.91
Sequence Information
- Coding Sequence
- ATGAATTATAATTTACATGATGAATATATCCACAAACTCAAAGCAGCAGTAAATAATGTCTTAAATACAGAACTGTCAAAAACTGAGGTTGCACATCTCTATAATATAAAACGTTGTTATATAAATACGGCCCTCCAGGAATTCGCACATTCAAGCAAGGCAATAGATGAATGGCAACCGAAACCAAGGAATCTTTTTACAAATGAAGTGTTCGACCAATTAATTCAGCAATTGTTTAATTCATCATGTTGTACTTGTACGTCTTGTGTAACCCATCATCTAGAAAAAATGGCTTACAATTGGATCCAAGAAACTCGAGAGGTTTGTCCAAAATCGTGGCAGGAAAAACGTGCAGCAATAGGATTCGTATACATTTTCGAAAAAAAAACAAAAATAAAAATTTCTGAGTTATTCCGTTCTTCAAAATATGTTTCTGATTCATCAATTTCTCAATTGGCAAATCAATCACAATCCTCATTGCTTGATGTGAAAAATAGTTCCCAGGTACCGCAAAATATAGAAGATATAGATAAAAGTGATAAATATAAACGTGAATCGAAAGCAACAATTAGAAAAAGAACATGGAAAGAAACTACAGATTTTAAGGTTCCATCAACTACGCTTAAGGAAAAGTTTTCGAAATTCGCAAAATCTACTAAGATTTCAAAATCTAATAACTTAGAATCACCCAACAACTCAAGATTATTTAAGGATTCAATTTCTCAGTCACCGCAAAATATAAAAAAAGAAATGTATATAAAAGATACAAGTAATAATACAGAAGATAAAATCAAAAGTGAGGAATATCATCGTACATTAATTGCAGCACTAGTTGATGTTAACTGTGGACAAAAAACTGTGAAAGAAGCTGCGGATTATTATGGGATATCAGAAAAAACTCTTCATATTGAGTTGCTGGAATTTGTTAAATAA
- Protein Sequence
- MNYNLHDEYIHKLKAAVNNVLNTELSKTEVAHLYNIKRCYINTALQEFAHSSKAIDEWQPKPRNLFTNEVFDQLIQQLFNSSCCTCTSCVTHHLEKMAYNWIQETREVCPKSWQEKRAAIGFVYIFEKKTKIKISELFRSSKYVSDSSISQLANQSQSSLLDVKNSSQVPQNIEDIDKSDKYKRESKATIRKRTWKETTDFKVPSTTLKEKFSKFAKSTKISKSNNLESPNNSRLFKDSISQSPQNIKKEMYIKDTSNNTEDKIKSEEYHRTLIAALVDVNCGQKTVKEAADYYGISEKTLHIELLEFVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01228299;
- 90% Identity
- iTF_01228299;
- 80% Identity
- -