Pcal021293.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- lov
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010005080.1:450214-453519[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-16 2e-12 47.5 0.0 1 44 474 517 474 518 0.95
Sequence Information
- Coding Sequence
- ATGTCGAGCGTCGGGGACAGTCCTGACAGAATGGCTCTGCAATCACACTATTCCCTACGATGGACCAATCATTCCACCCACATACAACGGGCATTCGAGGAGTTGCTACATGCCGAGACGCTCGTCGACGTGACCTTGATCTGCGCCGACAGCAGCGTCAAGGCACACAAAGTCGTCCTCAGCGCCTGCAGTCCTTTCTTCGAAAGGATATTCGCGGAGAATCCGTGCAAGCACCCCGTGATCGTGTTGAAGGACTTTTCGCATCATGAGTTGTCCAGTCTGGTAAACTTCATATATCGCGGCGAGGTGAAGATCGCTCAGGAGGAGTTGCCGGGGCTGATGAAGGCCGCAGAATGTCTGCAGGTGCGTGGGCTGATGTCATCGGAGCCTACGCTGGTGTCGACGGAGCCCAGGCCGTCATCTTTGGCGTCAACGCCGACGCGAGATCTCATTCTGGGTGAATTACCAACGCCGGAGGTCGCGCGACACGACACGCCCGAGGAGGATGAAAATGCGCTGGAAAGCACGAGAGAGATGAAATCCATTCTGTTTCAACCAACGAGGGACCATCCGGCCAAGTCGCTCATTGGCCACATGAACTTTGGTATCCGCGAGAGCTGCGGCTCGCCGTTGTTGCCACGCCGGAAACAGGCGCGCCCGCGCCGACGATCCGGCGAATTGCTGCCGCAAGATCTGAGCAGACGCTCGACACCGCCGAAGCCCATATCGCCGAGCGAGTTAGATCAGCATCACGTGAAGACGGAGGGTAGCGAAGCGACGAGCAGTCCTCGCGGCTCGCCATTAACAGGGACAAGTTTACTGCATCATCCGGATGGTCCTGTACAGGACATCCCGGCGGCTGTAGCGGCGGCGGTTGCTACGGTAGCGCTACCAACGATATCGACATTGTCGCTGTCACAACCGCATCCTCCTGAGTACCTGACAAGCCTAGGCCAGCTGGCGAGCCAATGGCTGCCCGGGCATCCGCAGAGTCAACTGCCACCGCCCCAAAGTCACCATCCGCGGGAGGACAGTCCACACGGTTCCGGCAGATCTCATCCGTATCAGCAACAGCAGCAGGAGTCGGCTCTGGTGCCACGACGTAGCGCCATGGCGATGTTCACGCCGACATTGGACGGCGTCACGGCTCTCGGTGGCGGGCTTTTCCCTCACACCGGCACGTACGAGAGGGGTAACCTCCTCGCGGATACGCTTCTAGCGGACAACTTCAAGCCAGAGGCACTGCAGAATCTTTTTGGTACTCCCACTCTCGGTCCTCCGCCCGCCAAAAAGACGAAGAAGCATCGTAGTGACGGTGATGCCACACGTAGATGGAGCGATCACAACACACGAGCACTTGCGGTTAATAGGCCCAAGGGGCAGCACAGTGCTCCGCGAGGAGGGCCACCGAGATCGTGGACGAATAACGAGCTCACATTAGCTCTGCAACATGTGTGGGAGAAGAAGCTCACCACGTCGCAGGCTAGTCGTATGTTCGGTATTCCCTACAATAGCTTGCTGATGTACGTGCGCGGCAAGTACGGGAAGAGTTTAAAGCTGGAGCAGTTACGTAGGAACTGTACCGGTGCCAATACCCCCGAAATTATGAACAACAACAACATCAAGCCCGTCCAGCAGTCCGCGCAGATGAGCCACGCGCTCACCGGTCTGCCGCTACAGCATCCAGGGGATAACGGCGGATACCCCCATCGCGCTCTGCTCGGTAGCAACATGCCGCAGCCGCAGGGCTTTTATCCCGCCGATTATACCTCGTCCTTTCCTATAGTGAATATGGTGCATATGTTACCCCCGAGTGAGCAGAAGGCCTTTGACTCATCCGCGAATCCGGGCAGCGACGGGGGCGGAGGTGGATGCGTAGGAGGTAGTGGAGGTGGGGACGGGAGCGGTAGTAGTGGCGGTGGTGGCGACCTGGCAAATTCGCAGACCAGCGAGACACCATCCCCCATCGTCGATCACCATCATCACCAAGAGTCGTCGATGCAGCCGCAACCAGCGCAATCGGCGCCCGCGTTGCTACAGCAGAACGGTTCCGATTAG
- Protein Sequence
- MSSVGDSPDRMALQSHYSLRWTNHSTHIQRAFEELLHAETLVDVTLICADSSVKAHKVVLSACSPFFERIFAENPCKHPVIVLKDFSHHELSSLVNFIYRGEVKIAQEELPGLMKAAECLQVRGLMSSEPTLVSTEPRPSSLASTPTRDLILGELPTPEVARHDTPEEDENALESTREMKSILFQPTRDHPAKSLIGHMNFGIRESCGSPLLPRRKQARPRRRSGELLPQDLSRRSTPPKPISPSELDQHHVKTEGSEATSSPRGSPLTGTSLLHHPDGPVQDIPAAVAAAVATVALPTISTLSLSQPHPPEYLTSLGQLASQWLPGHPQSQLPPPQSHHPREDSPHGSGRSHPYQQQQQESALVPRRSAMAMFTPTLDGVTALGGGLFPHTGTYERGNLLADTLLADNFKPEALQNLFGTPTLGPPPAKKTKKHRSDGDATRRWSDHNTRALAVNRPKGQHSAPRGGPPRSWTNNELTLALQHVWEKKLTTSQASRMFGIPYNSLLMYVRGKYGKSLKLEQLRRNCTGANTPEIMNNNNIKPVQQSAQMSHALTGLPLQHPGDNGGYPHRALLGSNMPQPQGFYPADYTSSFPIVNMVHMLPPSEQKAFDSSANPGSDGGGGGCVGGSGGGDGSGSSGGGGDLANSQTSETPSPIVDHHHHQESSMQPQPAQSAPALLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01477024;
- 90% Identity
- iTF_01229128; iTF_01228468; iTF_01228298;
- 80% Identity
- iTF_01229128;