Pcal018602.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- bab1
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010004798.1:277025-279263[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-17 1.8e-13 50.8 0.1 1 45 338 382 338 382 0.97 2 2 1.5 7.2e+03 -2.3 0.0 9 20 444 457 443 457 0.65
Sequence Information
- Coding Sequence
- ATGACTACTTCATCCCAACAATATTGCCTTCGATGGAACAATCATCGTTCAAATCTCTTGAATGTTGTTGACGAACTGCTACAGAACGAATCATTCACCGATTGCACCCTCGCTGTCGATAGTGGCCTAACAGTTAAATGTCATAAAATCGTTCTGGCCGCTTGCTCTTCCTACTTCCGTACTCTCTTCAGCGAACTGACATGCAAGCATCCGATAGTCGTGTTGAAGGATGTCAATTTTGGAGAGTTGAAAGCGATATTGCAATATATGTATCGCGGCGAAGTGAACGTGGCGCATAAAGATTTGAGCGGTCTGCTAAAGGTCGCGGAGACGCTGAAGGTGAAGGGATTAGTGAACGAACACGGGAGTTGCAGCGACATGGCGCGAGATACGTCACCGCCGCCGAACATTAGCACCAGCACCGGCGCAGCTCACAGCAGCGACCACCCGTCACCGCCGAATTCCACCAGTGTCTGCTATTCTCTTTACGACAAACCACTCACTCCGCTCGAACCGAGTCGCCTCGCGAGCTCGGGGTGGCCCCTGCCGCTATCCCTGCATTCCGGCGCGAGTCATCAGCCGACCTCTCTCTCCTCTGCCACCCTGAGCGGCTACGACAACGGCTACGAGTTCCCGTCGTTCAAACGCCGAAAGTTGCTACAACAACAACAGGCAATGTTAATGAGCAATGATACGCCTATACTACGTACGGTGCTCGGTCAAACTCACGCCGACAACTCGCAAGCTATACCACTCTTGCGAACGGACAGCCACGAATCGGTGAATTTTCGCAACACGAACAGCAATGGATCTACGAATGACAATGAAAGTCGCCGCAACAACGATCTGGCCCACGGCGAGAGGGCCCACAGTCCGCCGTTCGCCGACGCTCAGTACACGGATGAAAGCGAGAAACGGTCACCGCCGCAGTCATATGCAGTCGTGGACACCAAGTCAGGTATTGCGGATTGCGTCGCACCGAAACCCGAGTGGAAGCGCTACAAGCAGTACACCCGGGACGATATCACCGCGGCGATTGCAGCGGTAAGTAATGGCATGAGCGCGGTTCAGGCGGCCCGTAAATATGGCGTCCCGTCGCGTACGCTCTATGATAAGGTGAAGAAGCTCGGTATTCAGACATCGCGGCCGATGAAGCGTTCGGCAAGCAACGGAGGAAATGCGACCGTTTACTCGCACAATATTGGCGCCAACGTGAACGGCAGCCTTTATAGCATCGGCAGAAGTGTCGCAGCCGAAAACGAGAACGAGAACAGCAGCGGAGGTAACATCGCGGAGAATCTGGTCGGGACGAGCAGCACCTCGGTGGCTTTTGAGGCTTACGCAAAGGGATCAAAGGGAATGTCTCAGCAAGATCACGACTCTATACCGGACTCTATGCCGACTCGTTGCAGCTCGAATCTGTCGGTGAGTCGTAAATCCGACGTTTCGGCTGTAGTACCGTCGTCCAGTGCACCGACCTCGATTAAGAAAGAGACCCAGGAAACGAGCGAGCTGGATAACAGCGACCGCGATTACAGCTAA
- Protein Sequence
- MTTSSQQYCLRWNNHRSNLLNVVDELLQNESFTDCTLAVDSGLTVKCHKIVLAACSSYFRTLFSELTCKHPIVVLKDVNFGELKAILQYMYRGEVNVAHKDLSGLLKVAETLKVKGLVNEHGSCSDMARDTSPPPNISTSTGAAHSSDHPSPPNSTSVCYSLYDKPLTPLEPSRLASSGWPLPLSLHSGASHQPTSLSSATLSGYDNGYEFPSFKRRKLLQQQQAMLMSNDTPILRTVLGQTHADNSQAIPLLRTDSHESVNFRNTNSNGSTNDNESRRNNDLAHGERAHSPPFADAQYTDESEKRSPPQSYAVVDTKSGIADCVAPKPEWKRYKQYTRDDITAAIAAVSNGMSAVQAARKYGVPSRTLYDKVKKLGIQTSRPMKRSASNGGNATVYSHNIGANVNGSLYSIGRSVAAENENENSSGGNIAENLVGTSSTSVAFEAYAKGSKGMSQQDHDSIPDSMPTRCSSNLSVSRKSDVSAVVPSSSAPTSIKKETQETSELDNSDRDYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229122;
- 90% Identity
- iTF_01229122;
- 80% Identity
- iTF_01229122;