Pcal007727.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- kn
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010000022.1:1011884-1019146[+]
Transcription Factor Domain
- TF Family
- COE
- Domain
- COE domain
- PFAM
- AnimalTFDB
- TF Group
- Helix-turn-helix
- Description
- This is the helix-loop-helix domain of transcription factor COE. It is responsible for dimerisation [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.7e-118 1.1e-113 381.5 0.3 205 468 1 267 1 282 0.90 2 2 0.0046 53 2.8 0.3 547 562 282 297 274 307 0.75
Sequence Information
- Coding Sequence
- ATGAGGCGTTTCCAGGTGGTCATATCTACGCAAGTGGGAGTGGAAGGACCATTGCTTGCGGTCTCGGATAACATGTTCGTCCACAATAATAGCAAGCATGGACGCAGGGCGAAACGCCTGGACCCTAGTGATCCTGGCGAGTACAATAGTTTATATCCACCAATACCTCTCCAAACGCCGTGCATAAAAGCGATATCGCCTAATGAAGGTTGGACGACGGGTGGATCTACTGTTATAATCATCGGTGAAAATTTCTTCGACGGATTGCAAGTAGTTTTCGGGTCGATGCTAGTTTGGAGCGAGTTTATCACCCCACATGCAATCAAAGTACAGGCGCCGGCACGACAAATACCCGGCGTGGTTGATGTAACGTTACATTACAAAAGCAAGCAATTTTGTAAAGGAGCACCCGGTAGATTTGTCTACGTTTCGGTAAACGAACCCACAATCGACTACGGCTTCCAAAGGTTACAGAAACTCGTTCCACGGCATCCCGGTGACCCCGAGAAACTTCCAAAGGAGATAGTATTGAAGAGGGCGGCGGATTTAGCAGAAGCCATTTATAGTATGCCTAAAACCGGAAACATGGGGATCTCAGGGGCACCCAGAAGTCCGGGTTCAGTGCACGCACCCGCACCTCCTACATCCAGTTCAGCAACGGCCTTTAATTCGTATACGGGGCAACTTGCAGTGACGGTGCAGGAAAATGGTAGCGCGGCAAAATGGACTGACGGTATTCACAGTACTAACGGAAGTTATTCTGTTGCCAATCCGTATACCGGCAGCCCGACTCTCTACACCTCGCCGCACGAACAATACGGCATATTCTATACATCCGGGGACGGGAGTGCGTTCGCCCCCGTAGTACGACCACCGACCACCTCAGTCCCACCGCACTGGCCCACACAGCACCACCTCGCCACAGCCGCCCAGTAA
- Protein Sequence
- MRRFQVVISTQVGVEGPLLAVSDNMFVHNNSKHGRRAKRLDPSDPGEYNSLYPPIPLQTPCIKAISPNEGWTTGGSTVIIIGENFFDGLQVVFGSMLVWSEFITPHAIKVQAPARQIPGVVDVTLHYKSKQFCKGAPGRFVYVSVNEPTIDYGFQRLQKLVPRHPGDPEKLPKEIVLKRAADLAEAIYSMPKTGNMGISGAPRSPGSVHAPAPPTSSSATAFNSYTGQLAVTVQENGSAAKWTDGIHSTNGSYSVANPYTGSPTLYTSPHEQYGIFYTSGDGSAFAPVVRPPTTSVPPHWPTQHHLATAAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00867183;
- 90% Identity
- iTF_00385066;
- 80% Identity
- -