Pcal021056.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- ARID5B
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010005091.1:72526-82430[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-23 7.6e-20 72.0 0.0 1 89 274 360 274 360 0.95
Sequence Information
- Coding Sequence
- ATGTTTAAAGTATCGGACAGCGATTATTCTAATGTCCGTCGATGGCTCTCGACGACGAGAGCCGCTTGTGAATCGATTGAAAATTACAGCTCGGGAATTGGATCGGGCCCATCGCTAGCGCCGGTCGCGAGCTGCCGAGGGGACGAGGTGCTGACGATTTCAGAAAAGGTAGTCGTCCGCGTCCACGACCTGGTCACATGGCTCTCGCCCACATTGGAGTGGTCATGGGGCCGGGAGGTGTCCTACCCAACGACCCCGACATCCTCCCCGGAGACCAGTCCGCTCAGATACGAGATGCCACAGCCGCAGGTGCTGACGGACCCGGGGATCGACTTCTCGGACGTCGAAAAACAGCAGAAGGAATACGAGAGCAACCTGAACTCTTCGAGAAGATCTGACGGCTTCCAGACGAAGGTGGTGGTACTCTCGTATCCCAGGTACTGCCGTTATCGAGCCCTCCTACGTAGGCTCGAGGGTGCCGAGCCCTCCTGGCTGTGCTCGTCTATCGCGGCCGCGTTAGGGGGTTTCACAGCGACGCCAGGTACCAGGGTGCTCTTCTGCAGGGACACATTCGACTATCCGGACCTTGAAACCCACGAGCTGCTGTGCAATCACTTGGCACCGAAGTTGAAAGGTAGACCACGAAGAAAACGTAAAAAGCGCAGCGCTTCGCCGGGCGAATCGTCGAATGAGAGCGAAGCCTCGGTGGCGTCGACGTCAAAAAGCACGTCGGCGACCACGAGCACCAGTTTGGTGATACCCACGGTCGGCAGGCCGCCTTCGTCCGGGGTACGGCGGAGCGAGAGGAAGACCAGCGCGGAAGAGAAGAAGTTTATCACCGACGTGCAGAGTTTTATGAACTCTCGGGGTACGCCGGTCGGAAAGATGCCACTGCTGGGCTACAGGCAGATCGATCTGTTCCTGTTTTACACGAAGGTGCAAATGCTCGGTGGTTACGATTCCGTAAGCGCTGGCCGCCTTTGGAAGACCATCTACGACGACATCGGTGGCAATACGGGTTCTACTAGTGCGGCGACTATTACACGTAGACACTATGAAAGATTATTATTACCATATGAAAGATATCAACGAGGCGAAGAGACAAAAGTGAGATTAAATAATGGACGACGTACCAAGAGTATGAGCGCGTCCGACGATTTAGATATCAAGGAGGAACCGAGCGATACATACACGTCGGAGACACCTCCGCCTATAGATGCAATTCCGGCGATCACGACACCGCCTTTACAACCAATAATGTCAGCAACAACGACTTTACTCTCGAATGAAAAACCCAAAGCCGAAACCGGCGGCAAGACGTCTTCGTTACGTAGCGTGCGAGTGAAACCAGAACGCCTGAAGTCTCTGAATACAATAATCGCCAATAACGCGACACCTTCCAGCCAGCAAGCTAGCCAACTGCCAAGTCCACCGCCATCCTCCAATACGTCTGTCTCAACGCCCAACAGCACACCTTCCACAACGCCAACGAATGGTACCAGCAACAATCAGAGCGTCTTGGAGCGGCAGCTCAACAGTCCTTTAATATCCCAACAAGTTCCACCATCGTGTTCGCCACCAGGCTTGCCCGTAACCAGTGTAGCAACAAACGCGTCGACAGTCACACTAACGCCTCCGCCTGAGAAGGATATGAAGGAGATTAAGTTAGATCCCAAGCAGGCGACTCTATTGGCACAGGGCAAGGAAAATATACCGTTGTTCGGCGGTGAGAAATTCGTAGAGAAGACGATAGTACCACCGGTCTCTAGATCGCCCGAGGTGATTGATCTTGAGAACGAGAGCGATACTAGTCGGGACAAGATAATCATTCCCAGCTTTAAGAAACGCAAACTCGAAATTCTGCGCGAAGGTGGTCTCGAGGTCACCGCTGTCGACTTGGAGTCGCGACCTAGCGTGATTCAAAGTAACATCTCCATGTCGCCGCAGCAGCAACATCAGCCAGCGCCACCGCCGGCTACAATGAAGTCCGCTGAAGAAAAGCAGCCGTCGGTTTCACCGTATCCGCTTCCGGTCACGCCCAACTCCATTCCTAAATTGATATCTGTTACTGTGACGCCTGATATAGGACACATGCTATCGTCGCCGCAGGAGCATCAAAATCATCAACCGCGAATACCGCCGATCAAACAACTACCGGCTCATCACAACAATAACAATATCAGCATGATGAACAACAACAATGTGGCGAATAGTCGGATAATAAACCTCGGTAATTCTAACAATGCCGCGTTATTGCAATTATATGCGAATGCGAACGCGATATCTCCGACTTCAGCGACAATTCCATATCAACCAAACAATCGTTTCGTTCCGCCAAATATTCCAAATGGTGTTCTCGATCTAACGCAAAAGTCGAGTGAGAAACCGACGTTTCCTAGGCCCAGTCTAGAAATAGTCAGAGTACCTGTAGTGCAGAGGCCTAATCCGTTAAATTTGGACGTGCGAAACTCACTCGCAACCAAGGAGAAAGCGTCGGAAAGATCTGTCGCCGATTTTCCGAAACGAGTACCCCATCCTGCCTACCAAAACGTAATCGACAGTCGAACAATAGCTTCGAATAACCTCGAGATTACGTTAGTGAATCCCAAGCAAAAAAACAATCATCATCTAAGTACGCCGTCTCACGTCCAAATACCAAGTCCACCTAATAAAATCAGTGCAATAGGAACAATAAATAACGCGCAAAGGAGGCAGCAACCACCTCAACAGATGAATGGCAAGTATACAGTGAGAAGCGAACCAGTTTCGCCATATACGCCGAGGAAGCCGAGTCATCCCATTATTCCGAACGTACCAAATTTGAATCATCTGAATCATCATAGTGGAAGTTCGTTTGCAAGAATGCAGGCTACGACGATACAACAGCAACAACAGATGAGTATTGATAGGAGGAAAGCGGTCGCGGAGGTCGGTAGGGATCATCAACATCGTAGGATCAGCGAGGGCGAGAAATCATCCTTGGTAGCGCAACAACAGCAGCAGCAGCAACAACAAGAATCGAGGCAGAACGAGGCTGGTCGACGGCATAGTTTACCTAGCATACCATCGGGGTTTGTGCCGACGGTATCGCAAAACAATTCTGCCGCCTTTCCGTTGCCGCAACTGCCAAACGCGCCCGGCAAGTTCCTACCAATTCTGGACCCCATGTACTACTCCGCGTTCTATAATGGTTTGTTCCCACCGCCAATTCCGCCCACGGCCGCTGCAGCTGCTGCCGCGACGTCATTTCTACCGCCGGAATTTAGCGCATATTACAAGGAATTGCTCGCTTCCTCGCAACCAAGACTGACGGGGATGACGGGGCAGCCGCCGCATCAACAGCCGGCCGCCCCAACGTCTAAATAG
- Protein Sequence
- MFKVSDSDYSNVRRWLSTTRAACESIENYSSGIGSGPSLAPVASCRGDEVLTISEKVVVRVHDLVTWLSPTLEWSWGREVSYPTTPTSSPETSPLRYEMPQPQVLTDPGIDFSDVEKQQKEYESNLNSSRRSDGFQTKVVVLSYPRYCRYRALLRRLEGAEPSWLCSSIAAALGGFTATPGTRVLFCRDTFDYPDLETHELLCNHLAPKLKGRPRRKRKKRSASPGESSNESEASVASTSKSTSATTSTSLVIPTVGRPPSSGVRRSERKTSAEEKKFITDVQSFMNSRGTPVGKMPLLGYRQIDLFLFYTKVQMLGGYDSVSAGRLWKTIYDDIGGNTGSTSAATITRRHYERLLLPYERYQRGEETKVRLNNGRRTKSMSASDDLDIKEEPSDTYTSETPPPIDAIPAITTPPLQPIMSATTTLLSNEKPKAETGGKTSSLRSVRVKPERLKSLNTIIANNATPSSQQASQLPSPPPSSNTSVSTPNSTPSTTPTNGTSNNQSVLERQLNSPLISQQVPPSCSPPGLPVTSVATNASTVTLTPPPEKDMKEIKLDPKQATLLAQGKENIPLFGGEKFVEKTIVPPVSRSPEVIDLENESDTSRDKIIIPSFKKRKLEILREGGLEVTAVDLESRPSVIQSNISMSPQQQHQPAPPPATMKSAEEKQPSVSPYPLPVTPNSIPKLISVTVTPDIGHMLSSPQEHQNHQPRIPPIKQLPAHHNNNNISMMNNNNVANSRIINLGNSNNAALLQLYANANAISPTSATIPYQPNNRFVPPNIPNGVLDLTQKSSEKPTFPRPSLEIVRVPVVQRPNPLNLDVRNSLATKEKASERSVADFPKRVPHPAYQNVIDSRTIASNNLEITLVNPKQKNNHHLSTPSHVQIPSPPNKISAIGTINNAQRRQQPPQQMNGKYTVRSEPVSPYTPRKPSHPIIPNVPNLNHLNHHSGSSFARMQATTIQQQQQMSIDRRKAVAEVGRDHQHRRISEGEKSSLVAQQQQQQQQQESRQNEAGRRHSLPSIPSGFVPTVSQNNSAAFPLPQLPNAPGKFLPILDPMYYSAFYNGLFPPPIPPTAAAAAAATSFLPPEFSAYYKELLASSQPRLTGMTGQPPHQQPAAPTSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01254583;
- 90% Identity
- iTF_01228180;
- 80% Identity
- -