Pcal004868.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- XBP1
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010004870.1:218812-222146[+]
Transcription Factor Domain
- TF Family
- TF_bZIP
- Domain
- bZIP domain
- PFAM
- AnimalTFDB
- TF Group
- Basic Domians group
- Description
- bZIP proteins are homo- or heterodimers that contain highly basic DNA binding regions adjacent to regions of α-helix that fold together as coiled coils
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.2e-12 6.3e-09 36.6 14.6 2 56 87 141 87 143 0.94 2 3 1.4e-05 0.021 15.7 0.9 31 63 137 169 135 171 0.85 3 3 2 3e+03 -0.8 0.0 49 62 252 265 250 267 0.69
Sequence Information
- Coding Sequence
- ATGAGCTCCGTGAAGAGTGTCATCATCACCCTGCCTAAGGGAACGTCCAAGGCGATCGCGAGGAGCGAGCCGGCGCGGAACGCGCTATCCAAGCTGAACTTCGCGACGTCGATTTTGCTGGATAAGACGAGGATGGATTGCAGGAAGGTCGCCTCCACGCAACAGGAGGAGACGCGCGACGACGACGTTGCGACGTTTCTCGAACCCGTAGACACCCGCGTCCGCGGCAAGAAACGACGGCTGGATCACTTGACGTGGGAAGAGAAATTACAACGAAAGAAATTGAAGAATCGGGTGGCGGCTCAAACGTCGCGAGACCGGAAGAAAGCGAGATTGGATGAACTCGAAGAGACAGTGAGGGCGCAAAAAGAAAGGAACGAGATACTCGCGCAAGAATGCGCGATGCTGAAATCACGAAACGACGTGTTGACGTCACAGAATGAATGGCTATCGAACGAGAATAAGAGGCTTCGGAATGAAAGAGACGCAGTGAGGAACACGCTCACAGATCAGCAGCAACCCATCTGCTCTGCCTGTCGGACCCGTGTCGACGGTGCTGTACCTTCACTGGGATCTGCAGTATCCCCCAATGACCCTCTGCCGCAGGGTGGGACAGCACAGTCGGCATCGCGCCTGACACGAACGCTAGGAGCAGCCACGCTGCTGAAATTTCTGACTCTCTACTTCCTTTTGAAGAACTGTTCAGCGCCATCCAGAACGCCGACGCCGAGCAGTTCGAAGAGTTGGCGGAGAGCCTCCTGCGAGAAGTCAGTCCAGAAATTGAAGCAAATCCTCATAGATCAAATGAACAAGCGTCCGTCAGCGAAGCTCCCGATAAAAAATCTGACCATCCAGAAGCAATGGTGGGGCAGGCATCAGAAAATGTGGAAGCCGATAGAACCGGTGGAGGCTTGA
- Protein Sequence
- MSSVKSVIITLPKGTSKAIARSEPARNALSKLNFATSILLDKTRMDCRKVASTQQEETRDDDVATFLEPVDTRVRGKKRRLDHLTWEEKLQRKKLKNRVAAQTSRDRKKARLDELEETVRAQKERNEILAQECAMLKSRNDVLTSQNEWLSNENKRLRNERDAVRNTLTDQQQPICSACRTRVDGAVPSLGSAVSPNDPLPQGGTAQSASRLTRTLGAATLLKFLTLYFLLKNCSAPSRTPTPSSSKSWRRASCEKSVQKLKQILIDQMNKRPSAKLPIKNLTIQKQWWGRHQKMWKPIEPVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01519984;
- 90% Identity
- iTF_01228147;
- 80% Identity
- -