Pbar006039.1
Basic Information
- Insect
- Pogonomyrmex barbatus
- Gene Symbol
- grn
- Assembly
- GCA_000187915.1
- Location
- NW:577185-604452[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9 2.5e+03 -2.6 0.1 7 18 7 18 6 20 0.78 2 2 1.4e-19 1.8e-16 58.7 4.7 1 35 350 383 350 384 0.98
Sequence Information
- Coding Sequence
- ATGGACATGAGCAGCGAGTCAAGCACCGCTAGGTGGTACGAGCCGCCTAGGTCGTCGTTGGAGCCGCCTTCAGGGGGTGCCGGGGTGGCTGGAGTGGTCGGCAACCCCAGCGATTACAGGGGTTACTACCCCCACGCCGGACCGACGGCACATCACCCCGCGGCCGCACATTACGCCCACACAAGGATGTCGAGCAGCGGCGTGTCGAGCGGTCCGGTGAGCCAAGTCTGCCGGCCGCATTTCCACAGCTCGGTTCTCCATCCATGGTTGTCCGGCAGCAGCGCGGACACTTCGAAGACACCCTGGGGATTCCCCACGACGACGGCGACCACGGGCGGCGCTGTGAGCGACGAGAAGCCACAGAGTCCCCTGGGATCCTCGCTGCCGCCCACCACTGGAAGTTTATCGAGTCACGGTGGCGGTGGTGCCGGTCACCATCTCTTCTCCTTTCCACCAACACCACCCAAGGACGCCACGCCCGACAGCATTACCGCCAGCACGACCTCCAGCACGAACAACAATTCCACAAGCgAGTTAACAACGACCGAAAGTCAAGTCAAAGGAGTCAGAGGAAGTCAGAGGAAAACGTGGAGCAGGAGCTTTGGAGAAAGTCCTGTTAGATTCGAAAGGATTATGGCCGTGCAATTAACCGAGGAAAAGAGAAGGCGATCCGAAAGGCCACGCTGGTCTCGGAGAAAATGTCATCCCGCGAGGTTGAATAGTGAAAAGTGTAGAAAACAGATTGAGAATCGGAGATCGAAACgcctatatatatttctgcatggaaattctcaaaaatatacACGACAGCATGAAATGTTGAGAAAACGACGAATGCCTCTTCGCGCGATCAACGTGCTTCCGTGTTCGCGTGGGAAACGTCAGAATCGAGTTCTCGAGAAGAGAAGTTGCCGTGCTGCCTCCCGCTTTGACAATTCGATCTTGCGTTTCGCACGCGAGCACGAGCGAGTAATCTTACTGCGCGAATACGTTAACGCGcgaattaatatgattttccTTCCGTCGGGGTCCGTAGAGGGTCGCGAATGCGTGAATTGCGGCGCCACATCGACACCCCTCTGGAGACGAGACGGCACTGGCCACTACCTCTGCAACGCCTGCGGGCTTTATTACAAGATGAACGGTCAGAATCGACCCCTCATCAAGCCGAAGCGACGCCTGGTAAGTACCTAA
- Protein Sequence
- MDMSSESSTARWYEPPRSSLEPPSGGAGVAGVVGNPSDYRGYYPHAGPTAHHPAAAHYAHTRMSSSGVSSGPVSQVCRPHFHSSVLHPWLSGSSADTSKTPWGFPTTTATTGGAVSDEKPQSPLGSSLPPTTGSLSSHGGGGAGHHLFSFPPTPPKDATPDSITASTTSSTNNNSTSELTTTESQVKGVRGSQRKTWSRSFGESPVRFERIMAVQLTEEKRRRSERPRWSRRKCHPARLNSEKCRKQIENRRSKRLYIFLHGNSQKYTRQHEMLRKRRMPLRAINVLPCSRGKRQNRVLEKRSCRAASRFDNSILRFAREHERVILLREYVNARINMIFLPSGSVEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLVST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -