Basic Information

Insect: Pogonomyrmex barbatus
Gene Symbol: ZFX
Assembly: GCA_000187915.1
Location: NW:570418-621568[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0011 0.076 12.8 0.5 2 21 515 534 514 538 0.89

2 11 3.1e-05 0.0022 17.7 0.3 2 23 553 575 552 575 0.97

3 11 0.063 4.4 7.2 1.0 1 23 594 618 594 618 0.92

4 11 0.021 1.4 8.8 0.3 1 21 664 684 664 685 0.95

5 11 4.3e-05 0.003 17.2 1.3 1 23 749 770 749 770 0.98

6 11 3e-05 0.0021 17.7 0.6 1 21 776 796 776 797 0.95

7 11 5.9e-05 0.0041 16.8 2.0 1 23 814 836 814 836 0.97

8 11 0.00082 0.057 13.2 0.1 1 23 841 866 841 866 0.96

9 11 4.2e-05 0.0029 17.3 0.9 1 23 873 895 873 895 0.98

10 11 0.019 1.3 8.9 4.3 1 23 907 931 907 931 0.97

11 11 0.00077 0.053 13.3 1.6 1 22 937 958 937 962 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0011	0.076	12.8	0.5	2	21	515	534	514	538	0.89
2	11	3.1e-05	0.0022	17.7	0.3	2	23	553	575	552	575	0.97
3	11	0.063	4.4	7.2	1.0	1	23	594	618	594	618	0.92
4	11	0.021	1.4	8.8	0.3	1	21	664	684	664	685	0.95
5	11	4.3e-05	0.003	17.2	1.3	1	23	749	770	749	770	0.98
6	11	3e-05	0.0021	17.7	0.6	1	21	776	796	776	797	0.95
7	11	5.9e-05	0.0041	16.8	2.0	1	23	814	836	814	836	0.97
8	11	0.00082	0.057	13.2	0.1	1	23	841	866	841	866	0.96
9	11	4.2e-05	0.0029	17.3	0.9	1	23	873	895	873	895	0.98
10	11	0.019	1.3	8.9	4.3	1	23	907	931	907	931	0.97
11	11	0.00077	0.053	13.3	1.6	1	22	937	958	937	962	0.94

Sequence Information

Coding Sequence: ATGGAAGGCTATGAAGAAGACGATGATACTCACTTTTGCATCAAATGTAACTTGACAATTAACGGTCTTAACAATTATGTGCAACACCGTCGATCAGGCTGCCGACCACCCaatgttaaaattgttaaCGAGCCACCGTCGACACCGACAGTGTCTTATCCCGAAATTCTAAATGCAGACGCGTTCTTCAATTCGCTGGAATTACAAAGTAGTGCAAAGTCAAACACTAGAAGAGCCCCGACTTTATTGGATAACAGTCGAAAATTCAAGAAAGATGACAAGAGGAAGAAGTATCAAAAAGTCCAGGATGGCGACGAATCTGGCGCGAAAGATAAACTTCACAGCATGTTACCTGTCAGCGATTTGGACGAACCATCGGATTTGTGCATCCAGTCCATCAAGCAGACTACCTCCGAACGAAAAAGGCAGAGTTGGTTGGATGATACCATTCTCGACGATCTTGCTTTGGGGAATAACGCAAATAAGGATTTGGCGAGATACGATTTTGAGTATCCGAATGACGACGATGACTCCGATGACGATATGCTGGGGGAGGAATTGGGGGAGGATTCTTATTCGGATTCGGACGATGGTGAAAATCGAGAGCGTCCACCGAGAGATCATACCGGTGGAAAATGGAAACCCGGACTCGACGATTTGCCGCAGGACATGCCGCATATGCATGAGGAGGATGTGGAACTCGACGATGATCATCACGAACATCCTCCGCCGACGTATACCGGCGGCAAATGGCGACCTACGGAGATATCGCaaAAGGACGAGGAATACGAAAGTAAGAACGCATCTGGACAGCCGCCACCGGGACACACGCGAGGAAAATGGGTACCGGGTGCACAAACGGATATCGAGTCAGGATATTGGTGCAATCCTTGCGGCAGGAAACTCGCTTCACGATTGGTCTACGACAGGCATCTGCGCTCTGATTTGCACGCCAGGAGGAGCATTAGAGAACTCGACGGCGGTCTTCATCCACGACGCGGTATCAATTCTCACGCAAGAGTGTCCAGAAGAGTGTCCACTCGTAGACAGGCTTCGCTTGCAGCGAGGATGAAAGAAGAACCACAGCGAAAGAAAGTTAAGAAAGGTCTGCGTCGACGGGAGAAGGAGATTCTCCTGTGCGAAATGTGCCGCACACGTGTAAGGAGGCCTCAAATGGGTAAACATTTGCTCTCCCATTACCATTGCCGTGTGTCAGGTGTCCTCGTGAATCCTCGCAATCCAAGTGTACGCCGCTTCCTCCTGGAGCATATAGCGAATGTGGTTCGACAGAGCCCGTTCCAATGCGCTCCTTGTCATTTTTACTGCAACACCGAGGAGACGTTCCTGCTTCATTGGCGTTCCGATCTTCACTTCAAGACTGTAGAACAGATCGGCGGTAGTTGCAGATGCAATCCGTGTAACTTCTGGTGCGAAGACAACGCGACAATGGAATCTCACCTGCTGAGTACGAGTCATCGTGACGTAGTATCGATGATGAAGGGCTCCACCGTGCCGGTGGTAATTAGTCGTCAATGTGCGTTATCCTGCGGCGGTTGTGATCGGCAGTTTCGATACAACTTTCAGCTGCGATCGCACGCCAAGGAAACCGGTCACAACGCGGGCTACACCGCATCGGACGAGTACCAGCAGCGTATCAAGTGCGAGCTCTGCTCTCAAGTTTTCCGGTCTCTAGTTGCTCTTCAACGTCATCAATTGACTAGTCACGTCGTCAAGGACAAAAAGGAGGGCGAGGTCGCGACAGTCGTGCAACCGGCGCCATATTTTTGTTCCTTTTGCTCGATGAATTTCACCACCGCCCAAGAAGCGGTTCTGCATCGGAGAACCTCTAGTCACAAGGAAGCTGTGAAAGTACGTAAAAGTGAGGAGGGTCTGCTGGAGACAGTGCGGGAGTGCCCTCACTGCGAGCGGAAGCAACCGAATCTCGCGGCGCACAAGATTCATCTTCTCCATTGCCATCCAAAACTTTGCCACAgATGTCCTCGATGTGGTACGCTTTTCGCTTTGTCACAAGATGTCACCAGGCACACGCGAGAGGGtaattgtatcaaaaataGCAAATCGAACGTGGATGATAAAATGAACGTGAAGAAAGAATGGGAATGCAAAGAATGCATCTTCTCAACGGATTCCAAagctgaatttatttttcacgagGCCCTCCATGCCGGTGCTGTTCATGAAATGGACAAGGGAACGTCCGGCTCGAGCAAGTTGTTGCCGAAATATAAGTGTCCGACTTGTGCGAAAATCTTTACGAAAACATCGCTACGAAACCACATCAGACAGCATACTGGTGAAAAGCCTTTCCCTTGCATGAAGTGTTCAATCTCGTTCTCGAGGAGATCGCATCTTATCATTCATCAGAAGATATGCAGTTCTTTGTCGAAAGGCCTGGATAAAACTGGTCGTCGACGAAGCTTTATTTGTTTGGAGTGCAAAGAAGGCTTTTACACAAAACATGCTCTTCGACAGCACATGCTGCGACACGCTGGTAAGAAGTACAAGTGCGGCCTTCCGGGTTGTCCCACGATTCTTCGTACCGCATCTGAGCTGAAGACTCATCGAAGATTAGTCCACGACGACATCGAGAAACAGTATTCCTGTCCCGATTGCTCTTATGCCGCTAAGACAAAAACACAATTGCGCagGCATAGGATACGACACGATGATTCCGCGAGTACCGAGAAGATCCAAATCTATTCCTGCACTTACAATGGCTGCAATTTCAAGACGAAACTCTGCTCCAACTTGCGGAGACACGTGCGACTGCATACAGGCGCCAAACCGTACAAGTGTCGACATTGTTCCTATGCCAGCAATACTTTGGAAAATCTCCGAAAGCATATACTAATGACGAATCTACATCCTGGTAAGACGATTTACGAATGCCAATTttgcaagaagaaaaaagaagatccGTTTTGCacaaatttcgccaaggaacTTCGCGCTCACTTGTTGGAAGCTCACGCTGAAAACTTTCCGACACCAAACGATGCGaacaattatacaaataacatttttgcattaaactGA
Protein Sequence: MEGYEEDDDTHFCIKCNLTINGLNNYVQHRRSGCRPPNVKIVNEPPSTPTVSYPEILNADAFFNSLELQSSAKSNTRRAPTLLDNSRKFKKDDKRKKYQKVQDGDESGAKDKLHSMLPVSDLDEPSDLCIQSIKQTTSERKRQSWLDDTILDDLALGNNANKDLARYDFEYPNDDDDSDDDMLGEELGEDSYSDSDDGENRERPPRDHTGGKWKPGLDDLPQDMPHMHEEDVELDDDHHEHPPPTYTGGKWRPTEISQKDEEYESKNASGQPPPGHTRGKWVPGAQTDIESGYWCNPCGRKLASRLVYDRHLRSDLHARRSIRELDGGLHPRRGINSHARVSRRVSTRRQASLAARMKEEPQRKKVKKGLRRREKEILLCEMCRTRVRRPQMGKHLLSHYHCRVSGVLVNPRNPSVRRFLLEHIANVVRQSPFQCAPCHFYCNTEETFLLHWRSDLHFKTVEQIGGSCRCNPCNFWCEDNATMESHLLSTSHRDVVSMMKGSTVPVVISRQCALSCGGCDRQFRYNFQLRSHAKETGHNAGYTASDEYQQRIKCELCSQVFRSLVALQRHQLTSHVVKDKKEGEVATVVQPAPYFCSFCSMNFTTAQEAVLHRRTSSHKEAVKVRKSEEGLLETVRECPHCERKQPNLAAHKIHLLHCHPKLCHRCPRCGTLFALSQDVTRHTREGNCIKNSKSNVDDKMNVKKEWECKECIFSTDSKAEFIFHEALHAGAVHEMDKGTSGSSKLLPKYKCPTCAKIFTKTSLRNHIRQHTGEKPFPCMKCSISFSRRSHLIIHQKICSSLSKGLDKTGRRRSFICLECKEGFYTKHALRQHMLRHAGKKYKCGLPGCPTILRTASELKTHRRLVHDDIEKQYSCPDCSYAAKTKTQLRRHRIRHDDSASTEKIQIYSCTYNGCNFKTKLCSNLRRHVRLHTGAKPYKCRHCSYASNTLENLRKHILMTNLHPGKTIYECQFCKKKKEDPFCTNFAKELRAHLLEAHAENFPTPNDANNYTNNIFALN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423280;
90% Identity: iTF_01229383;
80% Identity: -