Pbar007941.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonomyrmex barbatus
Gene Symbol
-
Assembly
GCA_000187915.1
Location
NW:2244700-2248622[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 5.1 3.5e+02 1.3 0.2 1 8 106 113 106 115 0.90
2 16 0.13 9.1 6.3 1.5 1 23 393 415 393 415 0.96
3 16 0.0055 0.39 10.6 0.5 1 23 423 446 423 446 0.94
4 16 2.9e-06 0.0002 20.9 0.9 1 23 452 474 452 474 0.98
5 16 4.2 3e+02 1.5 3.5 1 23 549 571 549 571 0.82
6 16 0.0014 0.095 12.5 0.4 1 23 578 601 578 601 0.92
7 16 6.8e-05 0.0047 16.6 1.6 1 23 607 629 607 629 0.97
8 16 0.054 3.7 7.5 6.3 1 23 635 657 635 657 0.97
9 16 0.0011 0.079 12.7 2.4 1 23 662 684 662 684 0.96
10 16 0.085 5.9 6.8 3.3 1 23 697 720 697 720 0.94
11 16 7.9e-05 0.0055 16.4 4.3 1 23 736 759 736 759 0.96
12 16 0.00034 0.023 14.4 0.7 1 23 768 791 768 791 0.98
13 16 0.0092 0.64 9.9 3.1 1 23 797 819 797 819 0.97
14 16 0.002 0.14 12.0 2.8 1 23 825 847 825 847 0.98
15 16 0.00034 0.024 14.4 1.9 1 23 852 875 852 875 0.98
16 16 0.00031 0.021 14.5 1.2 2 23 881 902 880 902 0.97

Sequence Information

Coding Sequence
ATGGAAAATTGTACGATACGATGCCGTCTGTGTGGCATTAAATCTCTATCAGAGTGTTcgaaatatatctttgataaaGCGACTAATTTAGCacagataataaatgaaaCGTTACCAATCAAGGTTTCTCAAGATGATCTTTTCAAATACATATGTTCAGATTGTTATAATAGAGTTACTAgtcattatgattttattcaaaatatattgacaTGTTCGAAAGAAACTGAAGCAAAAATCATCTCCCTTTTTGAAGTTAacaaaaatgacaaattagaaaatgtgGCAATTTCTAAATTAGATGATGATATGATATATTCCTGTCCGAATTGCAACAgagatttaatgattttaatgaaacagACTCCTGAAGACTGTAATGCGTTTCAAATTTCACTAGCTGTTGTAGATCAAATCGAAAAATTAGCAGAAAAAAGTGTgcaaatatgtgaaaatacagtggaatttattaatgtttacaCAAAGAAATCAAATATGAAGGATAAATTACATGAATTGTCATTGAATAATATCAAGAATGAAAGTATGATAAAGAAACAAGACAGCAATggtatatatagaaatttgccCATATTGCAAAAGAATTCTGATACAAATCCTTGTATTGTATCAACAAATATATCGtgtgaaacaaataaaagtacaaagagtaaatttcaagaaaatgtttttgtcAAAACAGCAGTTAATCCTACTAGGCAAAAATTAGAAACGAAATTaagtgaaataaaacaaaatgccCATCAGTTCAATAGTGATTATAATAAACCACATATAGTTAGTATTAGGAAAATGCAATCAGAAATTAATGTTGAGGAATATTTTAgcgaaagaattaaagaaaatgacAACACAGAAAATATGGCAAAAAGCAAAGGCctcaatatgaatattattgacTCACAAgatcaagaagaagaaataaactCGAACATTGAACATTGGAAACAAAATACCGATGAAACTtgtaatgattataataagtCAAGTATAGATGACTTAATGTTTCAATCAGAAAACGATGTTTCGGAAAATGAAACAGAACTTAAAGAAAATGATGATACAATAGACATgacaaaaatagaagaaatggaTATCGACAAAAGTGATAACACAAACGacaataatatcgatattttaagaGGTAATCTAAAACATGTGTGCAACTTGTGTGGTGCTcgttatatttcaaaaatgaaatacgaGTTTCACATGGAAAGACataaattgaacaaaatagACAGATATGTTTGTCTTATATGCGacaaagaaagtaaaaatgaaaatttgttatgGGATCACTACCTTCACATGCATAAGAGGCCACAGCAATACATTTGTTTAGACTGCAATAAGGTATTTACAAGAAAGTTGGATTTAAATGAGCATCAAAAGAATCACAAACATTCTGGTTACAAAAAAACATCTGTTAATGATGACATGGACCATGATCAGGCGCAGGATGCAATGAAGGAGAAGCGAAAATGCACCGTCTGCAGAAAATTGATAAAGGATATTGATCCAAATGCTATCAATGATCTAGCAACGTGTGCCTCCTGTGAAGATTCTAGTGCGTGTCTGATGATCGATGGTGATGTAGCAAAAGTGGCTTTGCAGCGACAATATCAATGTTTGAAGTGCCGTAAGCACTTTTTACGCCGGGAAAGACTCGAGTTCCACGAAATGCGACATAACGAGAATATGAACGAATTTATTTGCAGCACATGCGGCAAAGAATTTAGTGGTGAGAATTCCTTGTACGAGCATTATCTTTTTGTACACGTAGGGGCTAGACCGCATATCTGCGAAGTATGTGGCAAATCGTTTCAGCTGAAAGCGCGATTAAAGGAACACCTTCGAAAACACACGGGCGAGAAGCCTTATCAATGCGAAATCTGCGGTCAGCGCTGCATGACTTCGCACTCACTGAAATTCCACAAGAAATCTCATTTCCCTGTTCGCCACGCTTGCAGCGTATGTAACAAATCGTTCCTCAAGAAGCAGAACTTGAATGAACATCTGGAGAAGCACTGGAAGAAAGACAAGAATGTAAAACTTCCGCGAATATTCACATGTTCCTTGTGCAATTGCGATCTACCGACCTATCGCATGCTGAAACATCACATGATTGGGACCCACAAACTCGATCGTCAAGACCCTTTGATAACGGAACAGAAACCGTTGTATGAGTGTAACGAGTGTCATGAGAAATTCAAGCATCAAATGTCGCTCAAGGCGCACAAGGAGAAAGTGCACGAAGGCAGAATTTATCCCCGTATATTTCAATGCGATATGTGCAAAGCTGAATATAAGGTAAAGCAGATGCTCATAAATCATATTAGGAGTAAGCACAATGGTGAGAAACGATACAAGTGCGCTAAATGCAATATGAAATTCATGGATACCAAGAGCTTGTATCATCACGTTTTATTGCATACTGGTAGAAAACCGTTCTCCTGCGAGTTCTGCAACATGAACTTCAGGCGAAAGAGTGCCAGGGACATTCATCGTCGTAAGCACACAAACGAATCTTATCAGTGTACGGATTGCAACGAATCATTTGGTAGCTACAGCAGTCGCTCAAACCATCGCAAAAAGGTACAtgggaataataaaattgagtgTCATGAATGCGGAGAAAAATACGATACGAcacaagaatttaaaattcatctgAACAAGCATCTTGGTGAACaactgaataaattaaaaagcttataa
Protein Sequence
MENCTIRCRLCGIKSLSECSKYIFDKATNLAQIINETLPIKVSQDDLFKYICSDCYNRVTSHYDFIQNILTCSKETEAKIISLFEVNKNDKLENVAISKLDDDMIYSCPNCNRDLMILMKQTPEDCNAFQISLAVVDQIEKLAEKSVQICENTVEFINVYTKKSNMKDKLHELSLNNIKNESMIKKQDSNGIYRNLPILQKNSDTNPCIVSTNISCETNKSTKSKFQENVFVKTAVNPTRQKLETKLSEIKQNAHQFNSDYNKPHIVSIRKMQSEINVEEYFSERIKENDNTENMAKSKGLNMNIIDSQDQEEEINSNIEHWKQNTDETCNDYNKSSIDDLMFQSENDVSENETELKENDDTIDMTKIEEMDIDKSDNTNDNNIDILRGNLKHVCNLCGARYISKMKYEFHMERHKLNKIDRYVCLICDKESKNENLLWDHYLHMHKRPQQYICLDCNKVFTRKLDLNEHQKNHKHSGYKKTSVNDDMDHDQAQDAMKEKRKCTVCRKLIKDIDPNAINDLATCASCEDSSACLMIDGDVAKVALQRQYQCLKCRKHFLRRERLEFHEMRHNENMNEFICSTCGKEFSGENSLYEHYLFVHVGARPHICEVCGKSFQLKARLKEHLRKHTGEKPYQCEICGQRCMTSHSLKFHKKSHFPVRHACSVCNKSFLKKQNLNEHLEKHWKKDKNVKLPRIFTCSLCNCDLPTYRMLKHHMIGTHKLDRQDPLITEQKPLYECNECHEKFKHQMSLKAHKEKVHEGRIYPRIFQCDMCKAEYKVKQMLINHIRSKHNGEKRYKCAKCNMKFMDTKSLYHHVLLHTGRKPFSCEFCNMNFRRKSARDIHRRKHTNESYQCTDCNESFGSYSSRSNHRKKVHGNNKIECHECGEKYDTTQEFKIHLNKHLGEQLNKLKSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01229268;
90% Identity
iTF_01229268;
80% Identity
-