Basic Information

Insect: Pogonomyrmex barbatus
Gene Symbol: -
Assembly: GCA_000187915.1
Location: NW:526707-531191[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.046 3.2 7.7 4.2 1 23 405 427 405 427 0.98

2 10 0.41 28 4.7 3.6 1 21 433 453 433 456 0.96

3 10 0.00013 0.0093 15.7 0.6 2 19 463 480 462 484 0.89

4 10 9.1e-06 0.00064 19.3 4.2 1 23 490 512 490 512 0.98

5 10 0.0008 0.056 13.2 0.1 3 23 520 541 518 541 0.93

6 10 0.11 7.6 6.5 1.8 1 23 548 571 548 571 0.98

7 10 3.2e-06 0.00022 20.8 0.9 1 23 575 597 575 597 0.97

8 10 0.00034 0.024 14.4 0.5 1 23 603 625 603 625 0.98

9 10 1e-05 0.00071 19.2 1.3 1 23 631 653 631 653 0.96

10 10 7e-07 4.9e-05 22.8 2.8 1 23 658 680 658 680 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.046	3.2	7.7	4.2	1	23	405	427	405	427	0.98
2	10	0.41	28	4.7	3.6	1	21	433	453	433	456	0.96
3	10	0.00013	0.0093	15.7	0.6	2	19	463	480	462	484	0.89
4	10	9.1e-06	0.00064	19.3	4.2	1	23	490	512	490	512	0.98
5	10	0.0008	0.056	13.2	0.1	3	23	520	541	518	541	0.93
6	10	0.11	7.6	6.5	1.8	1	23	548	571	548	571	0.98
7	10	3.2e-06	0.00022	20.8	0.9	1	23	575	597	575	597	0.97
8	10	0.00034	0.024	14.4	0.5	1	23	603	625	603	625	0.98
9	10	1e-05	0.00071	19.2	1.3	1	23	631	653	631	653	0.96
10	10	7e-07	4.9e-05	22.8	2.8	1	23	658	680	658	680	0.96

Sequence Information

Coding Sequence: ATGGACGTGGAAGAGGGGGAGGCGAAAATGTGCAGGCTCTGCGGCCAGTATGAGAGAATCTATATCGATGTGTTCGGTGAGGAAGGCATCAAACGTTACCTGGGCCTCAAGATTCACAGGAAAATCAACATCCTGATAGATGAGAAGGATCCTTTACCGAAGGCAATCTGTGTTCAATGCCTGGGTAAGCTTGAATTTGTTTGCGACTTTCAAGAAGAATGTCTGCGCACCCAACAAGTGTTACGCGATCAATATAATCTACCACCATTAACAGAATCTACAGAAGTAAAAAACGAAGAATCAACTTCGTCTGTGGGTGCGTCATCAGATAATAACAAcagtattgaaaaaaatcttaattctaGTAGAGACAATCAAACTGAAGAAAATCAGGATGATGTCGTCAAGACGTCAGTGGAAcagcaaaagaaaagaaataatacatcAAAGGTTCTACGAAATCTTCGCAgtcaacaacaacaacaacaacaaattTCCAAATGCAACGATGaaaatacagaaaagaatATACAGAGTCCACCTGCAGAAACGTCATTGACTCGTTGGCTTAGAAGCAAGCAAAGCACGGATAATTTGCCTGTGGATAATGAGGAGATCCCAATCGCAAGTAGATTAAGGAGTCACAACAATGTGGAAAACAACATTAGTGTTCGTActgtaaataataacaataatagtaaCAACGAAAATAGAGACAAACAAAGTCTaaagcaacaacagcaacaagaTACATCGACAACGATTCAATTACCAACTTcggctttaaataaattattaacaattgtcTCGGGCTCACCTGATATGGATGTTTCTGTGAAGGAAACAAGAAATCGAAATAATGATGCTGAGGATATTAGCTTCACTGTGGAGATGTGTAAAAAACGAAATGATGATGTATCGACGGTGCGAGCGCGCGTCTTTCCTGATCAAGGTTATTGTTCAGTTGATTCAGCAATCATAGATCTGCTGCAGAGTGAGAATAGCGCAGAAATAAAtagcattattaataacatccTTAGCAATACGTCTACGAAGAACAACAATAATGCGGCagcaaaattgaaagatttagCGGAATTGGAGGAACGTCTAGAGGCCACACAGAACCCGGAGGAACTTTTCAAGATCGACGGTGAGGAAATCAAAGTGGATGATAACGTGGAGCATGTGGTAAACGAAACACAAAATGGTTATGCATGCAAACTCTGCCAAAAATTCTATGAGCGTCGAGATAAGTGCACAGTTCACGTGAAAACGCATCTCGGTATCAAGCAGTATACATGTGTCGTTTGTAACGCCAAGTTTGTTTGCAAGTCTGATGTAATGAAGCACATTCGATGCTCACATACTAATCCTAGGCCCATACAGTGTCCCAAATGTCCTAAACGATTCAAATCCAAATTTTATCTAGCGGAACATGATAATGTTCATAAAGGAGTGCGACCATACAGTTGTACAGACTGTGGGCAAAGTTATCACCATAAGGTTTCGTTGCAAATCCACATGAAGTCACATTTGCCGCCACAAAATCTAGCCTGTGAGTATTGCGGTAAGGTCTTCCCATTTCGTACGCGATTGCTCGGCCATATAGCGAGTGTCCATATGAAAAAACGACGCAATTTTCGTTGTCGTTTCTGTTATAATCTTTACTCAAGTTTATCGGTACTAAATGAGCACATCAAGACTCGTCACGCGACCACATATACGTGCGACACATGTGGCAAGACTTTCAAAGTCGCTTCGAAATTCAAGGCACACGTACTGCAGCATTCCAATCCTAAGCCATTTGTGtgcaatatttgcaataatcgtTATGCGTCTAAGGCGTTTCTCAATGAGCATCTATTAAAACATGAAGGTTTACGCAAACATATATGTCAGGAGTGTGGCGCGAGTTTCGCACAAGCCAGTCACTTGGCTGCTCATCGCCATGTACATGGAGAGAAGACGCATGCGTGCCCGGAATGCGGGAAAAAGTTTAATCGTCGTGATAATATGAAGGTGCATCGGAAACGGCATTTTGACAAAAAGACTGGCACAACTAGCAAACAAAAAGTTATGtctaataacaataataatttggcCGCTTCCACCACATCTGTTAACGAGAAATGA
Protein Sequence: MDVEEGEAKMCRLCGQYERIYIDVFGEEGIKRYLGLKIHRKINILIDEKDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDQYNLPPLTESTEVKNEESTSSVGASSDNNNSIEKNLNSSRDNQTEENQDDVVKTSVEQQKKRNNTSKVLRNLRSQQQQQQQISKCNDENTEKNIQSPPAETSLTRWLRSKQSTDNLPVDNEEIPIASRLRSHNNVENNISVRTVNNNNNSNNENRDKQSLKQQQQQDTSTTIQLPTSALNKLLTIVSGSPDMDVSVKETRNRNNDAEDISFTVEMCKKRNDDVSTVRARVFPDQGYCSVDSAIIDLLQSENSAEINSIINNILSNTSTKNNNNAAAKLKDLAELEERLEATQNPEELFKIDGEEIKVDDNVEHVVNETQNGYACKLCQKFYERRDKCTVHVKTHLGIKQYTCVVCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLAEHDNVHKGVRPYSCTDCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPFRTRLLGHIASVHMKKRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCDTCGKTFKVASKFKAHVLQHSNPKPFVCNICNNRYASKAFLNEHLLKHEGLRKHICQECGASFAQASHLAAHRHVHGEKTHACPECGKKFNRRDNMKVHRKRHFDKKTGTTSKQKVMSNNNNNLAASTTSVNEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01523594;
90% Identity: iTF_01229245;
80% Identity: -