Basic Information

Insect: Pogonomyrmex barbatus
Gene Symbol: -
Assembly: GCA_000187915.1
Location: NW:178495-180070[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0013 0.092 12.5 3.0 2 23 75 96 74 96 0.96

2 9 4.6e-05 0.0032 17.1 2.3 1 23 98 121 98 121 0.96

3 9 0.00024 0.017 14.9 1.5 1 23 126 149 126 149 0.97

4 9 5.4e-05 0.0038 16.9 2.1 1 23 155 178 155 178 0.95

5 9 0.00029 0.02 14.6 2.0 2 23 185 207 184 207 0.95

6 9 4.8e-05 0.0033 17.1 0.4 1 23 212 234 212 234 0.97

7 9 0.00017 0.012 15.3 0.5 3 23 242 261 241 261 0.98

8 9 1.5e-06 0.00011 21.8 0.1 1 23 267 289 267 289 0.97

9 9 0.00024 0.016 14.9 0.4 1 23 295 317 295 317 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0013	0.092	12.5	3.0	2	23	75	96	74	96	0.96
2	9	4.6e-05	0.0032	17.1	2.3	1	23	98	121	98	121	0.96
3	9	0.00024	0.017	14.9	1.5	1	23	126	149	126	149	0.97
4	9	5.4e-05	0.0038	16.9	2.1	1	23	155	178	155	178	0.95
5	9	0.00029	0.02	14.6	2.0	2	23	185	207	184	207	0.95
6	9	4.8e-05	0.0033	17.1	0.4	1	23	212	234	212	234	0.97
7	9	0.00017	0.012	15.3	0.5	3	23	242	261	241	261	0.98
8	9	1.5e-06	0.00011	21.8	0.1	1	23	267	289	267	289	0.97
9	9	0.00024	0.016	14.9	0.4	1	23	295	317	295	317	0.97

Sequence Information

Coding Sequence: ATGGCAGATCCGTTGAACGTTGAATCCAATGCCCAGAAATCCTTTGCCAAAGTCGAATGtgaaaaaaggaggaaaaacgAAAAGTCGAGCGTAATAACAGAGTGTGAAGAATTGTTAACGGAATACAAGGAGAAATCGGAGAATGTAAACGCGAATCTAACAACGGAGCTTGGTTCGCGTACCGAAGAGAATCGACCGACTAGAAGGGAAACGACGTGCCTAGAGTGCGACCATTGTCGCCGCAAGTTCCTGAAGAAGAGCAACCTCGCCGAACACCTGAAACAGCACAGGCACAAGTGCTCCGATTGTCCCAAGACCTTTAGCCTTCGGCGTTATCTGGTCTCTCACGTTGAGAAGAGCCATCAGCAGCAAATGTACGAATGCAGCGTGTGCAAGTACAAAAGCAACAACAAGGGCACCCTGAAGAATCATTATATTCGGCTGCATACAAGCAATTACGATTACGCGTGCGACACGTGCGGCAAGCAGTTCAAGATAAAGAAGGCTTTGAATCACCACGTGAAACAGAACCACAGCGAGGCTCCGCCGATCGTGTGCGACGTCTGCGGTCACTTCAGCAAGAATCTCCATGCTCTCAAGGCTCACATGAAATATAGGCACTATAAGCCGGAGTTCGTCTGCCAGATATGTCGACGGGGTATGACCACTCAAGAGAACCTGCGGCGGCATCTCATGTGGCACGAAACCAGAGAGAAGGTACTCTGTCCGACGTGTGGCAAGAGGTTCCGAGGGCGCGACCTCGATTCGCATATGAGAGTGCACACCGGGGTGAAAGCGTTTCCCTGTCCTGTCTGCGGAAAGACGTTTCGACGGCAAACTGCTCAGGAGCAGCACGTGTTGATTCACACCGGAAAGAGACCTTACATTTGCGATATTTGCGGGCAAGCGTTCGCCCAAAAGCCCGGCCTAATTTGCCACAGAAAAAGACATCCCGGCCCGCTGCCACCGCTACCTGTAGTTTCCATCAAAAACATTGTTACGGAATTCACAAAAGAGTACGCCACGAAAAACGCGGTCACAAAGACTGAATAA
Protein Sequence: MADPLNVESNAQKSFAKVECEKRRKNEKSSVITECEELLTEYKEKSENVNANLTTELGSRTEENRPTRRETTCLECDHCRRKFLKKSNLAEHLKQHRHKCSDCPKTFSLRRYLVSHVEKSHQQQMYECSVCKYKSNNKGTLKNHYIRLHTSNYDYACDTCGKQFKIKKALNHHVKQNHSEAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCQICRRGMTTQENLRRHLMWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKAFPCPVCGKTFRRQTAQEQHVLIHTGKRPYICDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKEYATKNAVTKTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01354815;
90% Identity: iTF_00015577;
80% Identity: -