Basic Information

Insect: Pogonomyrmex barbatus
Gene Symbol: Cpsf73
Assembly: GCA_000187915.1
Location: NW:200835-216044[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.8 1.3e+02 2.7 0.1 3 23 15 35 14 35 0.94

2 15 3.5 2.4e+02 1.8 3.8 1 23 983 1006 983 1006 0.80

3 15 0.00011 0.0075 16.0 1.5 3 23 1094 1115 1092 1115 0.96

4 15 0.0025 0.18 11.6 0.2 2 23 1128 1149 1127 1149 0.97

5 15 2e-05 0.0014 18.3 2.3 2 23 1152 1173 1151 1173 0.97

6 15 0.0025 0.17 11.7 0.3 1 23 1179 1201 1179 1201 0.96

7 15 4.8e-05 0.0033 17.1 4.3 2 23 1208 1229 1207 1230 0.95

8 15 0.12 8.4 6.4 3.7 5 23 1243 1261 1242 1261 0.97

9 15 2.5e-05 0.0017 18.0 1.5 3 23 1268 1289 1267 1289 0.97

10 15 0.011 0.78 9.6 0.3 2 23 1305 1325 1304 1325 0.97

11 15 7.4e-05 0.0052 16.5 0.7 1 20 1331 1350 1331 1353 0.92

12 15 0.00013 0.0088 15.7 2.9 1 23 1361 1383 1361 1383 0.99

13 15 0.0026 0.18 11.6 3.2 1 23 1389 1411 1389 1411 0.97

14 15 4.7e-06 0.00033 20.3 3.9 1 23 1417 1439 1417 1439 0.99

15 15 0.0016 0.11 12.3 6.3 1 23 1445 1467 1445 1468 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.8	1.3e+02	2.7	0.1	3	23	15	35	14	35	0.94
2	15	3.5	2.4e+02	1.8	3.8	1	23	983	1006	983	1006	0.80
3	15	0.00011	0.0075	16.0	1.5	3	23	1094	1115	1092	1115	0.96
4	15	0.0025	0.18	11.6	0.2	2	23	1128	1149	1127	1149	0.97
5	15	2e-05	0.0014	18.3	2.3	2	23	1152	1173	1151	1173	0.97
6	15	0.0025	0.17	11.7	0.3	1	23	1179	1201	1179	1201	0.96
7	15	4.8e-05	0.0033	17.1	4.3	2	23	1208	1229	1207	1230	0.95
8	15	0.12	8.4	6.4	3.7	5	23	1243	1261	1242	1261	0.97
9	15	2.5e-05	0.0017	18.0	1.5	3	23	1268	1289	1267	1289	0.97
10	15	0.011	0.78	9.6	0.3	2	23	1305	1325	1304	1325	0.97
11	15	7.4e-05	0.0052	16.5	0.7	1	20	1331	1350	1331	1353	0.92
12	15	0.00013	0.0088	15.7	2.9	1	23	1361	1383	1361	1383	0.99
13	15	0.0026	0.18	11.6	3.2	1	23	1389	1411	1389	1411	0.97
14	15	4.7e-06	0.00033	20.3	3.9	1	23	1417	1439	1417	1439	0.99
15	15	0.0016	0.11	12.3	6.3	1	23	1445	1467	1445	1468	0.96

Sequence Information

Coding Sequence: atgGAGCTCAACGGTGCGGGAACGCCCGTCGGGGCCGTGGCTTGTCCCGTGTGTACTCTTTATTTACGCGAGGGTATCAGTCTGCAAAAACATCTGGACACTCATCCCAAGGAACAGGTTATAGAGGCTCTTATCAAAGCCAGCGCCTCCTCGTTGCAGacgcaacagcaacagcagcagcaacaacaacaacaacaacaacaacaacaagcTCTACCAGCTccagcagcagcagtagcGACAACAACAGCAACGTCATTACCTTTATCATTGCAATCGCAAGCTACACTTCAGACCCCTTCTTCTATCCAGACGCCTCAAACGTCGTCCCAGGTCTCGCAGAATGCGCATATTTCTACTCATTCACCATATCCTGTAGGACCTATCTTCGAATGTCCGCCCATAAGCACCATGATGCCACCGCAGTTCACCTCATTCAGCTATCAGCAATTTGTGAACAATGGGACCATGATGATACCGCAGTACGCGATGGCGCCGCAAGCCAATCAGATGATGCAGATGCTGTATAATCCATATGGTATGTACCAACAGCAAATACCCACCGTCCAAATGATCTCACCAGTTGCAGCTATTCCTGGCGCGACGACGAGGGCCCGACCAGTAGTCACGGTGGCTGGGGAGAGCAACGTCAGAACCCTGACAGTTCCTGTAAATAGTCCTGAGCCGAAGCAGATTCTGCCCGAGATTCTACCAGATACGGAGTCCGAGGCTGGACAAGTTATACCGGATGTGAGTCTTTCGGCCTCGCCGGTGTTGCAGAACGAGGATATATCCGTCAGGGTGAGGGAGGAGAGCGACGACGGCAGTGCACTGCCGATTGATCACCGGCAGCAGACGCAAAGTTCTACATCCGCTGGTGAAAATACGGTGCAGCAcgaatataatactattactaGATCTATTACAATCGCTTGCGCTATAGATAATACCGATGACAAAGTGGAGAGTGTGTTGCCGGACATGGTGGACGAGGAGCTGCCGACCAGCATTTCGACCACGGATATGCAATGTAAATCTGTGACGTACGAGCAACCGGAAACACAACAGTTTACGCAGCAGATCATGGAGAAGGGGTATATAAGTGTATCCAGTAGAAAATCTAATGCGACGGCTGACGCCGACTCCGTGGCTTGCGATCGCGAGTCGGAAGTAATAAGCGACGAGAGACCCGTAAGTCATGGCAGCAACGGTACCGTTGTCAACAGTAACGTTGCATCTCCGCGGGATATAATAGCAATAGACGCGTTGAAAGACTCTGTCCAACCCGAGCTTAACTCGGTAGAAAAATTGGAGAATCTGATAACGATAATGGAAACGGAACTTAATAATGCTTCGCTGCAGAAAGACAGTAATGTGCAAAATGATCAGGAGAGATTGGTAGACGCGAAGGAGAAGAACGCCGTGGTGGATCGGGAGGAGAGTGTGATTCACGATACGGTAGTCACAATTCCAGGTGCCCACGAGAAAGATCACATATTGCCCGACATACAGGAGGAGAACAATACGTGGAGCCCGAGTAATTACGTAGCCAATGAACTGAGAATGTTAGAGAAACGTTGTCGTTCGTTATGCAAAATAGACTGTTCGAAAGTAAACGACACCCTAGAAAGAACTTTGGATAGAACTTTTCATTCAGATAATTATAAGTATAGTTTTTCAGCGCCTGCGTCCCCAATTGCGAGGAAGAAGGGTCGCAGAAACGTGCGTCACTACAGCTCGCGATCGGAGCATGGGTCGTACGAAAATCTCAGCGGGTACCGCCATCGTGTCGGCTTCGATGACGCGACGCCTATgcatgacgacgatgacgaggatgacgatgatgacgacgaggacgacgacgaggacgtaGACGAGGACGAAAACGAGAAAATGGACGAAGAGGACAATTTCGACGAGGCGGACATGGAGATCGATGAAATTCCCAGTCCACACACGCCCTTCGCGGATTGCGGTGTCCGTTCGCATACGCCATTGTCCACGATCAGCGGTATTTCCGTGTTGAGAGTCAGGAAGGATCTCAGCAAACCGTGCTCACCCACGTCCGTACACTCGTTTCACCACGTCGACAGTGATAGCGTGACTCACGATGAGGACAGCAATGGCGTAGGTAACACCGCAGAAAAAGATCCGATTGACTGTTCTCAGGTAGAGGAGGAGAAAATCAAGACTGATCATCAGCGTCAGGAGGCACAGGTCGCGGTATGCGAGAACGTCGCGAAGGTTCAGGAATCGAGTAGCAGCTACACGTACCATCAGTCCGTGATTACCGAGCACGTCAGTTCGTTCCCCGTGATACACTCGCAATCGTCCGTCTTGATGCACGAGTCCTATTCCATCACGACGAGCACCAAGACGCAGAATCTCCTGAATCTCTCGGAGTCGATCAATCCTACAACTAGCGCCGAATCCAGGAGTTTTCACTCCGCCAAGTCGTTGATGCCGAAGCAATCGATGGAACTGCTCAACATAAATGAGGATGCTCACGCCGGGCCGATTAATGTCTTTGAATTCGACGGACTGCAAATATTAGTTCCTACTAGTACGTTTATAAGTGACTCGTCCCAGAAAGCGGTGAGCGCGACTAGCCAGCAATCCATGGCAAGTAGCGAGGGTGCGATAGGCATCGACGAGGAGGTGAAGAGTATTAATATGCGTGCCGATGAGACTATGCCGCCCAGAGGCGAATTGTCGGAACAAGAAAGCAATGGGTGCACGGAGCAGTCTGCATGGCAGTTGTACATGGGTCAAGAATCCTCACGCATGTCAACTTCTTATGATCTTTTGGCTCGAGAAAGCTGGGAAGAATCGGAAGGATCCGACAACGAGATCAGCGGGCCGTTGTTGGACAGTAGATCATTGGCTACGCATTTTACATCAAGTCTGTTTCTGGATCGAGACCGAAAGACACCGACCAAACGGACATTCAAGTGTTCTCACTGTAGCGAAGTGTTCGATTGCCCAAAGGAGCGCAGAGTTCACAGCACAACAGTTCACAAGGATGCGATGCCCAGTAGCAGTAGAGACCAATTGGATCAGCCAGAGGTAAAGGACATCAAATTGCTGGACAATCGTATAAACATGTTCGACGATATATTTGTGCCGAGTATACACATGCAACAGATGTATCATCATCAGCAACCTCTCTTGCATCAGCTGCAGCCGCCATCGCAGCCTGGCTCGGATGGTCTGACGAAGGCCGAAAATGACCAGAAGATCGGTGAGAATCTGGTGATACCCTCAAACATCGAGGTGATCTGCACGATATGCAATCAGCGATTCAACAGCGAGAAGTCTCTGCAGGCACATCATCGGCGCGTGCATATCGCTGATGTAAACAAACGCATACGCGAGACTTCCAAGTGCCAGATATGCAATGAAGAGTTCCCATCAGTGTTCCTATTCAACGCCCACTTGAAGATACATCCGTTAGAATGCGGACAGTGCGGCAAGTATTTCTACCGGAAGCAGAACTTTAAGCTCCATATGAAACGACACCTGGGCATCAAGCCGTTCCCGTGCACCGTGTGCGACAAGGCGTTCCTTACCAAACAGAAGTTAGAGGAGCATACCAACGGTCACACCGGTAACGCGCCCGTTCGTTGTAGCCTATGCAACGAGACCTTCCGTAGATACTCGAATTTGACTCAGCACAAAAACAGACACCATCTTAATATCAAGAAGAAGCTCAAAGACTATATATGCCACTGCGGTGAGGTGTTtcatacgaaaaaaaaactcgCCTGGCACAAGGAGACTCACGATGAGAAGCCCAAGGCGTGCACGTATTGCAATGAGCGATTCATCCACATGGCCAGCCTGACGCGTCATATGCGTCGCGCTCACAATCGCCGATTCGTGCCCGATGCCCAGCGCGAAAGTGAGAACGTCGAGTGCCCAATTTGCAAGTGTATCTACCTGCGATCCTCGCTGGCGGTGCATATGCGAGTGCATAACGGGGAACGGCCGTACGAGTGTCAGGTCTGCTCCAAGGCGTTCAGTACCAAGTGGAATCTGCAGCTGCACAAATGGACTCACGCGGCGCGCAGCACCAAGCCGTTCAAATGTACTCAGTGCAGCGCGGCGTTCTATCGTCACAGCGATTACACGGCGCACATGAATTCCCATCGGAACGTGCGGCCGTACACGTGCAACTATTGCGGCGCGCAGTTCATCCGCAAATACAATTGCCTGCGGCACGTAAAGGAGCACGAGGAGAACAAGGCGTACACGTGTGATGTGTGTAACAAAACCTTCCACCGCTCGTACTATCTTAAGGAGCACTTACGGGTGCACTCGGGCGCGCGACCGTACACGTGCCACATTTGCGGTAAGTCCAGCGGCACCAAGTCCAATCACAACAAGCACGTGCGAATTCATCATGCGCGCGAGCCTGTAAATACCGAGAATaagaatAATCTCTTGAGAGAAATcaattgttttgaaaaaatgtCAACGAGAAGAAAAGCCGACACGCAGGTGCCGGCCGAGGAGAGCGATTTGCTGTCGATTCGGCCTCTTGGTGCAGGCCAAGAGGTCGGCAGGTCGTGTATTATGTTAGAATTTAAGgggaagaaaataatgttggaCTGCGGCATACACCCGGGTCTTTCGGGAATGGACGCACTCCCGTTCGTCGATCTCGTCGAGGCCGACGAGATCGATCTGTTGTTGATTTCTCATTTTCACTTGGACCATTGCGGTGCCCTGCCCTGGTTTCTGCAAAAGACGAGCTTCAAGGGTCGCTGTTTCATGACGCACGCCACCAAGGCGATTTACCGCTGGCTATTGTCGGACTACATCAAGGTGAGCAACATAGCCACCGAACAGATGCTGTACACCGAGTCCGATCTGGAGACCAGCATGGACAAAATAGAGACTATCAATTTCCACGAAGAGAAGGATGTGTTCGGGATCAAGTTCTGGGCCTATAATGCAGGTCATGTTCTGGGCGCCGCTATGTTCATGATAGAGATCGCTGGTGTGAAGATCCTGTATACAGGAGACTTCAGCCGGCAGGAGGACAGACATTTGATGGCCGCCGAGATTCCAAATATCCATCCTGACGTACTGATTACAGAATCCACTTATGGTACTCACATCCATGAGAAGAGAGAGGATCGAGAGGGTAGATTTACAAATCTTGTACATGAAATTGTCAACAGAGGTGGTAGATGCCTGATACCTGTATTTGCTCTAGGAAGAGCGCAGGAGCTTCTTCTCATTCTGGACGAATATTGGAGTCAACATTCAGAACTGCATGAGATACCAATTTACTATGCTTCCTCCTTGGCAAAGAAGTGTATGGCTGTCTATCAAACATATGTGAATGCCATGAATGATAAAATTCGACGACAGATAGCTATCAATAATCCTTTCGTGTTCAAGCACATCTCAAATTTGAAGGGGATAGATCATTTCGAAGATATTGGTCCATGTGTCGTGATGGCCTCTCCTGGTATGATGCAGAGCGGCTTGTCAAGAGAGCTGTTTGAATCTTGGTGTACAGATGCGAAGAACGGAGTCATAATAGCTGGCTATTGCGTGGAGGGCACGCTGGCCAAGACCATTCTATCGGAACCAGAAGAAATTACAACTATGTCTGGGCAAAAGTTGCCATTGAAAATGTCTGTAGATTACATATCATTTTCCGCCCACACAGATTACCAACAAACATCGGAGTTCATACGTACTTTGAAACCTCCGCACGTGGTGTTGGTGCATGGTGAGCAAAATGAAATGGGTCGATTGAAAGCGGCGTTACAGCGAGAATATGAGGACGATCCCAACACTACCATGGAGATACACAATCCACGAAATACGGTCGCAGTCGAGCTGTATTTTAGAGGTGAGAAGACCGCCAAGGTGATGGGCACTCTGGCAATGGAGACTCCCAGGCCAGGACAGACGTTGTCCGGCGTCCTGGTGAAGAGGAATTTCAATTATCACATGTTGGCTCCGTGTGACCTATCCAAGTATACGGATATGAGTATGAGTCAAGTCATTCAACGGCAGAGTGTATACTTCTCCGCATCGTTGCCCGTACTGAAGCATTTGCTGACGCAGATAGCCGGTACGCTCGAAATCGTAGATGATAAGAAACTGAGGGTGTTCAAGAATGTTGACGTTACAATTGATGGCAAAATCGTCACGATGGAGTGGGTGGCGACGCCGGTGAACGACATGTACGCGGATTCGGTTCTCACCGCAATCTTGCAGGCTGAGCTCATGGACCAATCGCCTAAAGTTTTACCTGCACCTACTAAAATGGACAGGATGCACTTCAAGGAGTGCCTTATAGAGATGCTGCAGGAAATGTTCGGCGAGGATTCTGTGCCCAAGATATTCAAAGGTGAGAAACTCTACGTCACGGTAGATGGTAAGAAGGCGCATATAGACTTATTGAATTTGGAAGTGACCAGCAAGGAGGACGAAACTTTCCAGCAAATAGTGCAAACGGCGGTGACGAAATTGTATCAATCGTTAGCTCCACCCTGCGATGTAATATAG
Protein Sequence: MELNGAGTPVGAVACPVCTLYLREGISLQKHLDTHPKEQVIEALIKASASSLQTQQQQQQQQQQQQQQQQALPAPAAAVATTTATSLPLSLQSQATLQTPSSIQTPQTSSQVSQNAHISTHSPYPVGPIFECPPISTMMPPQFTSFSYQQFVNNGTMMIPQYAMAPQANQMMQMLYNPYGMYQQQIPTVQMISPVAAIPGATTRARPVVTVAGESNVRTLTVPVNSPEPKQILPEILPDTESEAGQVIPDVSLSASPVLQNEDISVRVREESDDGSALPIDHRQQTQSSTSAGENTVQHEYNTITRSITIACAIDNTDDKVESVLPDMVDEELPTSISTTDMQCKSVTYEQPETQQFTQQIMEKGYISVSSRKSNATADADSVACDRESEVISDERPVSHGSNGTVVNSNVASPRDIIAIDALKDSVQPELNSVEKLENLITIMETELNNASLQKDSNVQNDQERLVDAKEKNAVVDREESVIHDTVVTIPGAHEKDHILPDIQEENNTWSPSNYVANELRMLEKRCRSLCKIDCSKVNDTLERTLDRTFHSDNYKYSFSAPASPIARKKGRRNVRHYSSRSEHGSYENLSGYRHRVGFDDATPMHDDDDEDDDDDDEDDDEDVDEDENEKMDEEDNFDEADMEIDEIPSPHTPFADCGVRSHTPLSTISGISVLRVRKDLSKPCSPTSVHSFHHVDSDSVTHDEDSNGVGNTAEKDPIDCSQVEEEKIKTDHQRQEAQVAVCENVAKVQESSSSYTYHQSVITEHVSSFPVIHSQSSVLMHESYSITTSTKTQNLLNLSESINPTTSAESRSFHSAKSLMPKQSMELLNINEDAHAGPINVFEFDGLQILVPTSTFISDSSQKAVSATSQQSMASSEGAIGIDEEVKSINMRADETMPPRGELSEQESNGCTEQSAWQLYMGQESSRMSTSYDLLARESWEESEGSDNEISGPLLDSRSLATHFTSSLFLDRDRKTPTKRTFKCSHCSEVFDCPKERRVHSTTVHKDAMPSSSRDQLDQPEVKDIKLLDNRINMFDDIFVPSIHMQQMYHHQQPLLHQLQPPSQPGSDGLTKAENDQKIGENLVIPSNIEVICTICNQRFNSEKSLQAHHRRVHIADVNKRIRETSKCQICNEEFPSVFLFNAHLKIHPLECGQCGKYFYRKQNFKLHMKRHLGIKPFPCTVCDKAFLTKQKLEEHTNGHTGNAPVRCSLCNETFRRYSNLTQHKNRHHLNIKKKLKDYICHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRESENVECPICKCIYLRSSLAVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCTQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSGTKSNHNKHVRIHHAREPVNTENKNNLLREINCFEKMSTRRKADTQVPAEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTESDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHSELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRTLKPPHVVLVHGEQNEMGRLKAALQREYEDDPNTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAMETPRPGQTLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQRQSVYFSASLPVLKHLLTQIAGTLEIVDDKKLRVFKNVDVTIDGKIVTMEWVATPVNDMYADSVLTAILQAELMDQSPKVLPAPTKMDRMHFKECLIEMLQEMFGEDSVPKIFKGEKLYVTVDGKKAHIDLLNLEVTSKEDETFQQIVQTAVTKLYQSLAPPCDVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -