Basic Information

Insect: Pogonomyrmex barbatus
Gene Symbol: -
Assembly: GCA_000187915.1
Location: NW:136942-141065[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0086 0.6 10.0 2.7 1 23 18 40 18 40 0.99

2 13 8.4e-05 0.0058 16.3 3.0 1 23 213 235 213 235 0.99

3 13 1.3e-07 8.8e-06 25.2 0.4 1 23 241 263 241 263 0.98

4 13 0.0031 0.22 11.4 1.9 1 23 288 311 288 311 0.96

5 13 0.012 0.84 9.5 0.6 1 23 317 341 317 341 0.96

6 13 4.2e-07 3e-05 23.5 0.8 1 23 346 368 346 368 0.98

7 13 0.014 1 9.3 5.0 1 23 380 404 380 404 0.90

8 13 0.0012 0.082 12.7 2.8 1 23 406 428 406 428 0.98

9 13 4.2e-06 0.00029 20.4 0.2 1 23 434 456 434 456 0.96

10 13 3.8e-06 0.00026 20.5 1.4 1 23 462 484 462 484 0.98

11 13 0.0072 0.5 10.2 0.4 5 23 499 517 490 517 0.79

12 13 0.0067 0.46 10.3 7.2 1 23 523 546 523 546 0.94

13 13 0.0018 0.12 12.1 1.8 2 19 549 566 548 569 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0086	0.6	10.0	2.7	1	23	18	40	18	40	0.99
2	13	8.4e-05	0.0058	16.3	3.0	1	23	213	235	213	235	0.99
3	13	1.3e-07	8.8e-06	25.2	0.4	1	23	241	263	241	263	0.98
4	13	0.0031	0.22	11.4	1.9	1	23	288	311	288	311	0.96
5	13	0.012	0.84	9.5	0.6	1	23	317	341	317	341	0.96
6	13	4.2e-07	3e-05	23.5	0.8	1	23	346	368	346	368	0.98
7	13	0.014	1	9.3	5.0	1	23	380	404	380	404	0.90
8	13	0.0012	0.082	12.7	2.8	1	23	406	428	406	428	0.98
9	13	4.2e-06	0.00029	20.4	0.2	1	23	434	456	434	456	0.96
10	13	3.8e-06	0.00026	20.5	1.4	1	23	462	484	462	484	0.98
11	13	0.0072	0.5	10.2	0.4	5	23	499	517	490	517	0.79
12	13	0.0067	0.46	10.3	7.2	1	23	523	546	523	546	0.94
13	13	0.0018	0.12	12.1	1.8	2	19	549	566	548	569	0.94

Sequence Information

Coding Sequence: atgatttcaatatttttttcaatagcaATCGATCAGGATGAAGAGGACATATTCCAGTGCGGCAAGTGTAAAAGCCAGTTTACATCACTTCAAATGTTTGTTCTGCACAAGAGAACGCACCAGAAAACACAACAAACTGTGGACCTGACTCAGTTCTTAACAAATGATGAGAGTCAAGTAATGCATGTGGAAGATGCTGTTCAGGATGAGTCACAATACAATTCCCAGGAAACTCTTCAACTTGGAGAACCTATTATTCTCGAAGAAGCAGACATGTTGTTTAGTGTGGACCAGGAGGCTGCTAATTATTTCATGACGGATTCCACATTTGGTGTACCGATCATCTTAAGTACAGAGAATCTGGATACTTTTGGTAACGCTGCAATCGAGGCGACAAGGGAAGACTCGAGTGAGATGCCGACAATACATCTACAAAACGATATCAGTTCGCAGGAGGACGCTTCGAGTCAGTCTGAACATCCTAGCATCTCTTTAACGGACAATGAGCCCTCCCTGGCAGACAACGAGCCACCTTTGGAGGACAACGAATCCTCTCTCGAGAACAACGAGACATCCTTCCAGGACAATTCACTCGGTGAATCGGAAAACGGCATTAATCAAACGCAAAATTTAAGGTATAAGTGTGGTTACTGCAACAAGCAGTTCGCGAAGAAATTCTACTGGCAACAGCATGAACGTTCTCATACTGGAGAAAAGCCTTATCAGTGTGTGGTATGTGGACGTGCGTTTGCACAAAAGTCAAATGTGAAGAAACATATGTCCTCGCACAAAGTATGGCCCGGTACCGCCATTCACTCTTTACCGCCGGAAgCGCCTCCGGACGGAAGTATAGATCGCACGTACCATTGTCAGTTCTGCAAGGAAACGTTTGACTCATACAAAGCTCTGAAGGGCCATTTAATCGTCTCGCATATGGCGTTGAAGGTGTACAAATGCGTGCAAAGCAGCTGCAGCATGATGTTCTCGGACTTGGAGGAGTTTCTGGAGCACACGCGCAGCCATAAGTGCTCGGAGTATCGATGCCACGTGTGCGGCGAGGTGTTCAGCACTCTGTCGGATCTCGGTCGCCATCAGTACGTTCACTCCGTCCAGAAGCAGAAGACCACGGAGAAGTACTACTGCTGCTCGACTTGCAAATCGTCATTCTCAAATCTGGAAGCATTGCAACATCATAAAGAGACCACTACGCACAATTATGTCTGTCTGCATTGTGGCAAGAGTTTCCTCATCGAGAGGTTCTTACGTCGTCATCTCAAGACCCATTCAGCATCGGCGAGATTCGCTTGTGAGGATTGCGGCAAGGCCTTCAAAACCGAGCAGTATCTGGCCAATCATAAGCTGATACACAGCGAGGAGACGCCTTTCACATGTccaCATTGTCCGGCTAGATTCAAGCGAAAAGATCGGCTGGGTCGACACATGCTGATCCACGATCTGACAAAGAGACTCAAATGTCCATTTCGCAACTACCTGGGCTGCATGAGTGAGTTTTCGCGGCCCGACAAGCTTAAACGGCATTTGCTGACACACAGTAACGTCAAGCGGTTCAGTTGCAGCCATTGCAATCGCAATTTCCATCGCGCACAAGCTCTTAAGCATCACGAGATGAACAAGCACAGTCTCAAGTGTGATATCTGCTCTCATGCCTTTAAGACTAAAGAACAACTGGTTACTCACAATTGCGAGCAATCGAACGAGACCAAGAAGCACACGAGCTCGCAATTACCGAAAAAAGCATCCGGATCATTTAAGCCGAGGAAACCCACCCCAAAGAGACAAACATTATCAAAGACTGCAATTCCGCTTGCCGACAaagagaaattagaaaaactcAAAGCTGACGAGATAGaaagaaaaACCGTCTCCGAAACATTCAGATCTGGCGATTTCGAGGAATTCAGTAAAAAAACCGGGAACATTTCTGTCGTCTCAAAAACAGTCGTTGAATCGTCCGGCGGTGAATTAAACGAGCGATCCGATTCGCCAGTTATGGATTTCGAAGACGATTTTAAACGCAACATGGAGTACTACTCGCCCCATGCAAACGAGTAG
Protein Sequence: MISIFFSIAIDQDEEDIFQCGKCKSQFTSLQMFVLHKRTHQKTQQTVDLTQFLTNDESQVMHVEDAVQDESQYNSQETLQLGEPIILEEADMLFSVDQEAANYFMTDSTFGVPIILSTENLDTFGNAAIEATREDSSEMPTIHLQNDISSQEDASSQSEHPSISLTDNEPSLADNEPPLEDNESSLENNETSFQDNSLGESENGINQTQNLRYKCGYCNKQFAKKFYWQQHERSHTGEKPYQCVVCGRAFAQKSNVKKHMSSHKVWPGTAIHSLPPEAPPDGSIDRTYHCQFCKETFDSYKALKGHLIVSHMALKVYKCVQSSCSMMFSDLEEFLEHTRSHKCSEYRCHVCGEVFSTLSDLGRHQYVHSVQKQKTTEKYYCCSTCKSSFSNLEALQHHKETTTHNYVCLHCGKSFLIERFLRRHLKTHSASARFACEDCGKAFKTEQYLANHKLIHSEETPFTCPHCPARFKRKDRLGRHMLIHDLTKRLKCPFRNYLGCMSEFSRPDKLKRHLLTHSNVKRFSCSHCNRNFHRAQALKHHEMNKHSLKCDICSHAFKTKEQLVTHNCEQSNETKKHTSSQLPKKASGSFKPRKPTPKRQTLSKTAIPLADKEKLEKLKADEIERKTVSETFRSGDFEEFSKKTGNISVVSKTVVESSGGELNERSDSPVMDFEDDFKRNMEYYSPHANE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00110004;
90% Identity: iTF_00016851;
80% Identity: -