Pbar003924.1
Basic Information
- Insect
- Pogonomyrmex barbatus
- Gene Symbol
- JARID2
- Assembly
- GCA_000187915.1
- Location
- NW:1175772-1188346[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-23 9.3e-20 70.1 0.0 6 89 913 994 909 994 0.93
Sequence Information
- Coding Sequence
- ATGAAGAATCTGAGAGTTCAATGGAAACAAATAATACAAGACCCATTACCAGACAAAGTCTTGGAAAAATTGACAAACCAATTAGTAGGAGTCTCAGATCATCctccaaaaaatataaatgtatcgacagaaatacaaaataacacAAATAGCAAATTAAGAACTCAAGTTCAAAGTTGTGCGAAATTagctaaagaaaaatttgtgatGAAACGTAAACGCGAGCAAAATGTATCTAAAACATTATCAGAGAAAACTAACGAATCAAATGAGAAAAGCCttaaaaatgatcaaaatgAAAAGGCGGAATCCGAAGAGGAAACATTGGGAATGCTacttactaaaataaaaaagaagaaagaaaccGAGGAGGAGGAAAGGCATATCTCAAATGttagcaatataaaaaatagtaagacAACTCGTGACAACGTGCAAAATATGAAAGCGGATCTATCAAAAGTATCGGACGATGAGGAATCTTTTCGTGGGTTTACCAAGAAGGCAATATCGAAGGTTTTGAATTCATATCAGACACATGCCAATGttaatctattaattacaGAATCTGATGAAAAGTTGAATTTGTCCAAAACATTGGACCTATCGCAAACAACGAATCAAAATATCGTTTCATTGGAAAGTAAAGTTGAAACGTCACCGGTCAAAGCTGGTTCTCCAAATTCGCTAAACGACGAATGCAGTGTATCTGTGCAGGATCAAAAGTCAATATTAGATTTGTCTGCAATTGAAAcgcaaaatgcattttttttatcaatgaaaaacaaatgtaatcaCGAGAACGAGGTTTCTTCCAACCATATGCCATTGTCAACTCTGCATATAAGAAAAGAACGAGTGAACATGTCTACCGAACAGATAGAAAAGTGGTTGAATGAAAGTTCACTTGCCAAAGAAGAGAGTAAATTGGAAATGGAAaatgtttctaattttaaatacgattCTACGGAAAAGTTGAAAGCAGATGTCTCGCATTTGTCTATTTCGACGAAAATTCAGCATCTAGTACGTCCAGTCAACGTTacactttcaaaattatcagatAAGATGAATTCGAAAGATCGCACAGggatatacaataaaaatatagcacCAGTAGCATCTGATACGTATAATACTGAAGCAAAACAGCAAAATACAattaccaataaaaataagatcatTAGCGAGATGAAAGATATTACAAtcaatattaagaataaaactCAGAAGATAAGTAAAGATACTTTTCCAGTTGATGATGTTAGCGATACTGTGTCCAAATCAGATCAAAACTCAGTAGACAGTTCTATAGAGAAAAAATCACcgacagagaaaaaaatatttcaaccgCGGAAGCCTTTTCTACCTAAGGTTAAAGAACGTAAGACTGTAACGAATGCAAATGCGTTTTCGCCAGAGAATGAAAGCAGCGTTTATGCGTTCGAAAGTGACACCGAGGTTCCTGTTAGTACACCCTTCAGACGAAAAAGTAAGGACAATGTTAAACATTTGATTGCAATAACGCCCACGATAACTGCAGTGTCCAAAGAAGCCAAAGTAACCAAAGcaattgttgaaaataaatcgaattttaagaatgattttgaaatGTCAGACAGCAAGGAAAAGTCATCGAACAATTCTGTTACGTCCACGAATAAAGAACAGGAGACACAGGAGTCGATGAACATAGCGAATACGATTCCAAACATGAACAAATTTGAGCTacctaaaaattttgcaagttTAACCAGTGTTCAAGTATTACCTCTCGACAAGCTTACGACGAGCTGGAGCAATGTAAATTGCAGCGCTTCTATAGCAGTGCAAGTAAATCTTGACAAGACTACGCAAGATCAAGAAAGTGATGTAAATCAACAAAAAAGTACTGAGATATCCACTCAGACTGAAATGAGTAATGagaatgatgatgataatgacgGACAGCTATTTTACATTCCATTACAGACCGTTACAAGAAGCGGTCCGAATCTGGTACAAGGTCAACAGTTGATACAGGGTGTGGCTGTTAAACTCGGCACCGAAGGACCGAATGGTTCTAATCAAAGGGTACTCCTTCGGGCTAAATTGGTTACCAAGCCACCGTTAACCGTGGCACGTTGTCCACCGATAGGAACGGTACAACCGACAACCCGTACCCTGCCCAATCCTATGGCGATCACGATGGAACAGCAAATACCATCGACATCAACAGTCACAACTGTGTCAACTACGACAGCAAATATGTCGAATGCAGAAACGCAACCGACATCACCAGCAAAAAGCGAAGTCTCAATATCAAGTTTAAGTCGTCAAAATATTAGTATGAGCGCGAACAATTTAGAAAAACTGAAGTCACCGAAGTCATCGAGGGAACGAAAAGCTTCTATAGATTCGACAAAAAGTGGAAAAagAACACAagtaaaatacaaacaaaaggGATCAGAGCTATACTCTTTAagcaataatacaatatttccaAATGGGAAAACTGCGAATGATGAAATTCGCGTGATCGAGGCGCCAACATTCTATCCTACAGAGAAAGATTTTCAGGATCCGTTGGagtatatagataaaataaagtcAATCGCTGAAAAATTTGGGATATGTAAAGTTGTACCGCCACAAAACTTCAAAccAGAATGCAAGGTATCTGATGATATGAGATTTACTGCTTACAATCAATATGTACATCGCATGCTCCATAGATGGGGTCCTAACGTAAAAGAAATGATGgctatcaaaaaatatttagcaacTCAGAGTATTACTTTGACTCAACCTCCATGGattggTGGAATGGAAGTTGATTTGCCTCACTTGTATCAAACAGTTCAAAGTTTAGGTGGGTTAAAAGAagttattgaaaagaaaaaatggcaGAAAGTAGCAGATGGCATGAAAATACCAAAATCAGCACAAGATCGTATTACTAAACTAgatgatatttattgtaaatatttattgccaTACGATACGTTATCTAcagaggaacgtgaaaaattatttgatgaagTTGAGATGGAATGGATGAGAAAAGAAAGCAAAACTTTGCAAAGGCAAGAGATGCCGTccaatgataatgatgatgaagaggaagaggacAGTTCTGATGAAATCGAGGAATGCATTGTAAAAGGAAGAAATATGCCATTGAATGCTTTTTATCGAATCGCTCGTAACACGCAACGTATGTGGTTTGGCGAAAATCAACGAGGAAACGAAGCTGAAGGTGCTTCTGCCGATGAAGTAGAGAGTGCATTTTGGAAACATGTCGCCGAGAGAAAACGTCATGTCTGCGTACATGCAGCGAGTATCGATTCAAGTGGTCGTGGGTTTGGGTTTTCCGTTGCCAAAAACAGTCCATTTGCTAGACATCCTTGGAATCTTAAAGTTCTCACTAACAATGCTGGATCAGTATTGAGAGCTTTGGGTCCCCTAATGgGTGTCACTGTACCGACATTGCATGTAGGTATGTTATTTAGTGCTTGTTGTTGGTATCGCGATCCACACGGTCTACCATGGATAGAATATCTACATACAGGAGCTAAAAAGATTTGGTATGGTATTCCCGATGAATATAACAACAATTTCCGGGAAGCGCTCTCGAAAATGGTACCAcagtattgtaaaaataaaactatatggTTACCTTCTGACACTGCTATGGTTCCACCAGAATTATTAGTGAGCAACGGTGTGCCATTATGCCAGATTGTACAAGAGCCTGGGCAGTTTATAATAGTATTTCCGAAAGCGTTCACGTCGAGCATATGTACTGGTTATGTAGTATCTGAGAGTGTATATTTTGCACAATCATCCTGGTTAGAAACCGCTGAACAAGTATTTAAGGACATACAAGACAGTTGCGAACCTTCTATCTTTtcattcgaaaaattattatttaatattattaatgatacaaGATCTCACATAGATATATTGAAAcagATATTGCCAAGTGTAATGAAGATTCGTAAAAAGGAATTAGATTATCGTAAACAATTGGAAAACATAGGTctcatcaataaaaaaagattacctTTACCAGATAATGGAAAagggaaaagaggaaaaaagtgA
- Protein Sequence
- MKNLRVQWKQIIQDPLPDKVLEKLTNQLVGVSDHPPKNINVSTEIQNNTNSKLRTQVQSCAKLAKEKFVMKRKREQNVSKTLSEKTNESNEKSLKNDQNEKAESEEETLGMLLTKIKKKKETEEEERHISNVSNIKNSKTTRDNVQNMKADLSKVSDDEESFRGFTKKAISKVLNSYQTHANVNLLITESDEKLNLSKTLDLSQTTNQNIVSLESKVETSPVKAGSPNSLNDECSVSVQDQKSILDLSAIETQNAFFLSMKNKCNHENEVSSNHMPLSTLHIRKERVNMSTEQIEKWLNESSLAKEESKLEMENVSNFKYDSTEKLKADVSHLSISTKIQHLVRPVNVTLSKLSDKMNSKDRTGIYNKNIAPVASDTYNTEAKQQNTITNKNKIISEMKDITINIKNKTQKISKDTFPVDDVSDTVSKSDQNSVDSSIEKKSPTEKKIFQPRKPFLPKVKERKTVTNANAFSPENESSVYAFESDTEVPVSTPFRRKSKDNVKHLIAITPTITAVSKEAKVTKAIVENKSNFKNDFEMSDSKEKSSNNSVTSTNKEQETQESMNIANTIPNMNKFELPKNFASLTSVQVLPLDKLTTSWSNVNCSASIAVQVNLDKTTQDQESDVNQQKSTEISTQTEMSNENDDDNDGQLFYIPLQTVTRSGPNLVQGQQLIQGVAVKLGTEGPNGSNQRVLLRAKLVTKPPLTVARCPPIGTVQPTTRTLPNPMAITMEQQIPSTSTVTTVSTTTANMSNAETQPTSPAKSEVSISSLSRQNISMSANNLEKLKSPKSSRERKASIDSTKSGKRTQVKYKQKGSELYSLSNNTIFPNGKTANDEIRVIEAPTFYPTEKDFQDPLEYIDKIKSIAEKFGICKVVPPQNFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIKKYLATQSITLTQPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRITKLDDIYCKYLLPYDTLSTEEREKLFDEVEMEWMRKESKTLQRQEMPSNDNDDEEEEDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQRGNEAEGASADEVESAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEYNNNFREALSKMVPQYCKNKTIWLPSDTAMVPPELLVSNGVPLCQIVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQSSWLETAEQVFKDIQDSCEPSIFSFEKLLFNIINDTRSHIDILKQILPSVMKIRKKELDYRKQLENIGLINKKRLPLPDNGKGKRGKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -