Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004697.1:1909634-1928457[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.028 2.9 10.1 2.7 1 23 246 268 246 268 0.97

2 13 0.099 10 8.4 0.4 1 23 278 300 278 300 0.97

3 13 0.035 3.5 9.9 1.5 1 23 305 328 305 328 0.96

4 13 0.0048 0.48 12.6 3.8 1 23 336 358 336 358 0.99

5 13 1.3 1.3e+02 4.9 0.8 1 17 365 381 365 388 0.85

6 13 0.0027 0.28 13.3 3.6 1 23 396 418 396 418 0.96

7 13 0.42 42 6.5 6.8 1 23 427 449 427 449 0.99

8 13 0.85 86 5.5 0.5 2 20 459 477 458 480 0.94

9 13 0.00077 0.078 15.1 0.2 1 23 489 511 489 511 0.98

10 13 3.9 3.9e+02 3.4 4.0 1 23 520 542 520 542 0.92

11 13 0.00031 0.031 16.3 2.1 2 23 552 573 551 573 0.97

12 13 0.012 1.2 11.3 5.3 1 23 582 604 582 604 0.99

13 13 0.075 7.5 8.8 4.9 2 23 610 632 609 632 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.028	2.9	10.1	2.7	1	23	246	268	246	268	0.97
2	13	0.099	10	8.4	0.4	1	23	278	300	278	300	0.97
3	13	0.035	3.5	9.9	1.5	1	23	305	328	305	328	0.96
4	13	0.0048	0.48	12.6	3.8	1	23	336	358	336	358	0.99
5	13	1.3	1.3e+02	4.9	0.8	1	17	365	381	365	388	0.85
6	13	0.0027	0.28	13.3	3.6	1	23	396	418	396	418	0.96
7	13	0.42	42	6.5	6.8	1	23	427	449	427	449	0.99
8	13	0.85	86	5.5	0.5	2	20	459	477	458	480	0.94
9	13	0.00077	0.078	15.1	0.2	1	23	489	511	489	511	0.98
10	13	3.9	3.9e+02	3.4	4.0	1	23	520	542	520	542	0.92
11	13	0.00031	0.031	16.3	2.1	2	23	552	573	551	573	0.97
12	13	0.012	1.2	11.3	5.3	1	23	582	604	582	604	0.99
13	13	0.075	7.5	8.8	4.9	2	23	610	632	609	632	0.95

Sequence Information

Coding Sequence: atgtTTCATGCCAATGAATCGGATGTTTTGGGCCAATATGAACCTAATTTAACAGGATGTATTGCAGAAGACAGAAATTTCATAGAGACTAAGATTGAAATTGATGAGCATCTGCTCTCGGAACcttgtaataataattcagGTAGTAATAGTGAACAATATCTTAAAACCAAACAAGAAGGCAGTCGTATATCTGCCATTAAATACCCTTTTGCCAGTAATTTAGACTTTGACAACGTAGAAAAGACTATAGAAGTGCCTTTGAATTATGTAGTCGCTAGTTTCCATGGTGGGAAAGAGAGGAAGCAGTTAAATGGTAGCATTCCGGAAGAGACGAGCGAAGGTTTTAAGAAACACTCGGGAGTAACAGTTTTTGCCAAAACAGATTGTACTTCCATCTGTAATAAAAAAGTCAATCGTAATTTGAAGAACGGAAAAACTAAATTCCTCGACAGGgagaaattaattgttttgttacAGAGGGAAGATCTCTATAAGTTACAGGAAACTCTTAGGAAAAATCAGAGCAAAAATGAGGAAACAAAAAGGAGGTGGCGTCGTTGGAACAACGCCAACCAACCCAAGACTTTCGGCTGTCGATCCTGCCCGTTCAAGACAGATTGTAAGTACCTGCTCATGGTACATGTTGTGGACAACCATAAGGAGGTGGCCAAGGAGAGGAAATTGTTAGAGGCGCGGTATTTGGCACCGGGGAGTAGCCCTAGCGAAGTATGGTTCAAGTGTATCGACTGCTCTTTTGTATCTAGACACAAAATCTCCTTGCAGAGGCACTTGTTAACTCACAAATCGATAGATGAAATAGAGCAGACGTTCAGGTGTGCATCCTGTCCATTCGTCTGTAAAAATAAGGGCGGCATTATGAAGCATGTGGCCGTGCACACGACGGCAGTGTATAAATGCCCTCAGTGCGACTTCTGTACGAAACGTGAGGCGTATATACCGAAGCATATTAAGATGATACACGAGGCTGAGGAAAGAGAGAGGTTCAAATGCGGTGTGTGCGAGTTTGAGACAATACACCATATGAGTCTGAAAAAACATATGCGCATCCATTCCAACAAAAGGAGAGTATACAAGTGTCCACAGTGCCCGTTCCAGACCAACACTTTGTACACACTAATGAATTCACACAAGTTGACGCATGCTTCTGACGAGGCCAGGATTCACGCTTGCACCTTGTGCAGCTACAAGaccaAGAGAAAAGACTCGGTAACTAAACACATGCTGACTCACATGACCCCCGAGGAGGCTGTCATGTATAAATGTGATCTGTGCTCCTTTGCTACCAAGCACAAGCACTTTTTACCTCGTCACCGGAGGACCCACATGGTGGTGGACAAAAAGGACTTGATCCCTTGCAGTCTGTGTCCCTACAAGGCGAAGTCCAAGGGCTGCATGGCCAGGCACATGTGGTTGCACCAGGATCCAAAAGAGGGCACCATGTACAGGTGCGACCAATGTCCGTACGAGAGTCGGAGCGGCGGCAACTTGAAGCGGCACATCCTTCTCCACAAGAACAAGGAGGAGCTGCCCAACTTCCAATGCGACAAATGCGAATATCACACATTCAGCCAGGCGCGTTTGGCGGCGCACTGCAAGGTGCACCAGGATCCCTCGAAGATTGTGTGGAAGGAGTGCGGAGAATGCGGGCACAAGACGAGATCTACAGGGAATTTAAAGAGGCACCTCCTAACCCACAAGAAACCCGAAGAGTTAGACCTGTTCAAGTGCGACCATTGTTTGTTTTCCACGAAAATGAAATCGACTCTGAAGTCGCACTTAATGAAACACATGGACGTGTACTTGAATTGCAACGAATGCAATTTCAGGACAAAGGACAGGAGCAGCCTCAGCCTGCACAAAAAGAGGTGTCATTAG
Protein Sequence: MFHANESDVLGQYEPNLTGCIAEDRNFIETKIEIDEHLLSEPCNNNSGSNSEQYLKTKQEGSRISAIKYPFASNLDFDNVEKTIEVPLNYVVASFHGGKERKQLNGSIPEETSEGFKKHSGVTVFAKTDCTSICNKKVNRNLKNGKTKFLDREKLIVLLQREDLYKLQETLRKNQSKNEETKRRWRRWNNANQPKTFGCRSCPFKTDCKYLLMVHVVDNHKEVAKERKLLEARYLAPGSSPSEVWFKCIDCSFVSRHKISLQRHLLTHKSIDEIEQTFRCASCPFVCKNKGGIMKHVAVHTTAVYKCPQCDFCTKREAYIPKHIKMIHEAEERERFKCGVCEFETIHHMSLKKHMRIHSNKRRVYKCPQCPFQTNTLYTLMNSHKLTHASDEARIHACTLCSYKTKRKDSVTKHMLTHMTPEEAVMYKCDLCSFATKHKHFLPRHRRTHMVVDKKDLIPCSLCPYKAKSKGCMARHMWLHQDPKEGTMYRCDQCPYESRSGGNLKRHILLHKNKEELPNFQCDKCEYHTFSQARLAAHCKVHQDPSKIVWKECGECGHKTRSTGNLKRHLLTHKKPEELDLFKCDHCLFSTKMKSTLKSHLMKHMDVYLNCNECNFRTKDRSSLSLHKKRCH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -