Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004692.1:119347781-119350023[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 8.3 8.4e+02 2.4 3.8 1 23 281 303 281 303 0.97

2 10 0.4 40 6.5 0.7 1 23 312 334 312 334 0.96

3 10 0.00031 0.032 16.3 4.8 1 23 343 365 343 365 0.98

4 10 0.047 4.7 9.4 0.9 2 23 375 396 375 396 0.97

5 10 0.00017 0.017 17.1 3.7 1 23 405 427 405 427 0.98

6 10 0.00068 0.069 15.2 1.8 1 23 436 458 436 458 0.98

7 10 1.4 1.4e+02 4.8 5.0 1 23 467 489 467 489 0.97

8 10 0.00021 0.021 16.8 4.3 1 23 498 520 498 520 0.98

9 10 0.00014 0.014 17.4 0.4 1 23 529 551 529 551 0.96

10 10 0.0015 0.15 14.2 4.5 1 23 560 583 560 583 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	8.3	8.4e+02	2.4	3.8	1	23	281	303	281	303	0.97
2	10	0.4	40	6.5	0.7	1	23	312	334	312	334	0.96
3	10	0.00031	0.032	16.3	4.8	1	23	343	365	343	365	0.98
4	10	0.047	4.7	9.4	0.9	2	23	375	396	375	396	0.97
5	10	0.00017	0.017	17.1	3.7	1	23	405	427	405	427	0.98
6	10	0.00068	0.069	15.2	1.8	1	23	436	458	436	458	0.98
7	10	1.4	1.4e+02	4.8	5.0	1	23	467	489	467	489	0.97
8	10	0.00021	0.021	16.8	4.3	1	23	498	520	498	520	0.98
9	10	0.00014	0.014	17.4	0.4	1	23	529	551	529	551	0.96
10	10	0.0015	0.15	14.2	4.5	1	23	560	583	560	583	0.97

Sequence Information

Coding Sequence: atggaaaattgtgagaaacagTTGTGCAGGCTCTGTCTGAATACTTTAAATGATGAAAGTGGTGAATTAATAGACGGAGCTACAAGAAACATTCTAGATATTCTTCTGTTGAACCTAactTTTGGTAGCGAGAGTAAACATGTAATGTGTACTGCCTGTTCTATAAATCTACAAGCAGCATTGAATTTTAAGTCGTCATGTATTGACATTGACAACACTATTATTTGTTATGTTGATTGTGGAAAAGTGTCTCCAGTTGATTTAAAAGAGATATATTTAAAGGAAAGGGGAACAAGGGAATTAATCAGTATAGAGGAAGATCAAAATGTATGTCGTTTATGTATGCAGCTAGTGAATGGTGAATTTAGGCCATTACAGGAAGTTGGTGTTGACTTAATCCAAAATTTTATTCCTGAAGTGAATTTCAGAGTGACAGAAGATCCTGTTATTTGCAACCCGTGTTTCGATTCTCTTGGCACCCATAACGATTTCATAAAGAGCTGTCGCGATATAgaagaaaaacataaatattttcgtGATAATAAAAAAGACTTGAGTATAAATTGCCAAGGCCCATCCATCAATTTTCCCATCAAAATTGAAGACGTTCAAGTGAAATCTGAAAACGAAGATGAGGTGGATGCGTGGCGAATAAAAATTGAGGACGAGGGGAATGACAGGGTAATAAAAACCGAAATAAAAACTGAGGAAGTTGAAGTCAAATCAGAGGAAAATGAACAGGATAGattCGGTTCAATCGACCCATCACATGAAAATAAAACCGGTCCCATTGAAAGACAGGATCTGCAGCTGGTGGAAGAGTCTGGAAAATCTGAAATATACAAGTGTGTTTCTTGCGAGTATAAAACGCATATTTATAGATACTTTAGACGTCACATATTGATCCACCGACAAGCGTCGGAAGTAACATGGCATGAATGTGATTTGTGCGACTATAAATCCAGATGGAAAGGTCCTTTGAAGGATCACATCCTGAagcataaggatccttcagaaatACAATACTACGAATGTGATTTGTGCggttgtaaaattaaatataaatatcatcTGAAGAGGCACATGTTGATACATAAAAATCCCTCGGAAATAAAGTGGCGCCAATGCGATTTGTGTGATTATAAATCAAAATGGATGTATCAGTTGCGAAATCACATGCTGACGCATACAGATCCTTCAGAAATAGTGTGGTATGAATGTGATTTTTGTGATTATAAATCTAAACGGACATCACATTTAAAAAGGCACCTGTTGATCCATAAAGATCCGTCAGAACGGGAGACGTATGAATGCGACTTGTGTCACTACAAAGGCACATATAAAGATGACTTGAGAAGGCATGCGTTGACACATAAAGACCCTTCGGTGATACGGTGGCATAAATGCAGTTTGTGTGAGTATAAAGCAAAACTGGCGTGTCACCTGAAAGCTCACACGCTGATACATAAAGATCCTTCGGAAATACAGTACTTTGAATGCCATTTATGTGGCCACAAGACAAAGGTTAAAGGCAGTTTGAAGAAACACATGCTAATGCACAGAGATCCTTCGGAAATCGACTGGTATGCGTGCAACGTGTGCGACTATAAATCGAAACAGAGTAGTGGTTTGAAGAAGCACTTGGTCGTCCATAAAGACCCTTCACAAATACAATGGTACAAGTGTGAGTCTTGTGACCATAAGTCGAAGCGGAAAGAAACTTTGAAGCGGCACTTGCTGATGAAGCACAAAGATTCCTGA
Protein Sequence: MENCEKQLCRLCLNTLNDESGELIDGATRNILDILLLNLTFGSESKHVMCTACSINLQAALNFKSSCIDIDNTIICYVDCGKVSPVDLKEIYLKERGTRELISIEEDQNVCRLCMQLVNGEFRPLQEVGVDLIQNFIPEVNFRVTEDPVICNPCFDSLGTHNDFIKSCRDIEEKHKYFRDNKKDLSINCQGPSINFPIKIEDVQVKSENEDEVDAWRIKIEDEGNDRVIKTEIKTEEVEVKSEENEQDRFGSIDPSHENKTGPIERQDLQLVEESGKSEIYKCVSCEYKTHIYRYFRRHILIHRQASEVTWHECDLCDYKSRWKGPLKDHILKHKDPSEIQYYECDLCGCKIKYKYHLKRHMLIHKNPSEIKWRQCDLCDYKSKWMYQLRNHMLTHTDPSEIVWYECDFCDYKSKRTSHLKRHLLIHKDPSERETYECDLCHYKGTYKDDLRRHALTHKDPSVIRWHKCSLCEYKAKLACHLKAHTLIHKDPSEIQYFECHLCGHKTKVKGSLKKHMLMHRDPSEIDWYACNVCDYKSKQSSGLKKHLVVHKDPSQIQWYKCESCDHKSKRKETLKRHLLMKHKDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -