Phis029296.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonocherus hispidulus
Gene Symbol
-
Assembly
GCA_963924545.1
Location
OZ004697.1:4041461-4047688[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00061 0.062 15.4 3.3 1 23 336 358 336 358 0.99
2 10 0.00026 0.026 16.5 3.8 1 23 367 389 367 389 0.99
3 10 0.00067 0.068 15.2 1.4 1 23 398 420 398 420 0.98
4 10 0.15 15 7.9 2.0 1 23 429 451 429 451 0.98
5 10 0.00061 0.062 15.4 3.3 1 23 460 482 460 482 0.99
6 10 7.3e-06 0.00074 21.4 4.3 1 23 491 513 491 513 0.99
7 10 0.00026 0.026 16.5 3.8 1 23 522 544 522 544 0.99
8 10 0.001 0.1 14.7 2.2 1 23 553 575 553 575 0.98
9 10 0.35 35 6.7 1.0 1 21 584 604 584 605 0.95
10 10 2.5 2.5e+02 4.0 1.0 1 21 653 673 653 674 0.93

Sequence Information

Coding Sequence
atggaaaatatcgAAATAAAGTTTTGCAGGTTGTGTTTTAAAACTATAAACGATGTAAATTTCAAAGTAATAGGAACATGGGCAAGAGACATGTTAGATGTACTTTTGCTACCGCTGAATTTGGAAAACGGAACTAAATACTTTATGTGTAATGGTTGTTATGAAAAAGCGTGCGCAGCATTGAAGTTTAAGTCCACATGTTTGGACACTGAAGATTCTATCTTTCCTCATGTTAATTGTGAAGGTGTCATCAATttgcaagaaatatattttaaagataagGGAAATGAGCAGTTAATAAACATATCCAATGGCCAGAAAATATGTCGTTTATGTATGCTGTTAGTAAGCGGTAAATATATATTCTTTCATGATCTGGAAAAGTACATGATTCTAATATATATTCCAGAACTGGATTTCAGTGCCACCAAAGATCCCGTGATTTGCATGCCATGTTTCGAATACCTTGACACCCATAGCTGTTTTATAAAAAGTTGTCTTGAATTGGAGAAAAAGCGAAAACATTTTTGTTGCAGTGGAGATGGAAGTAGTCGAGTTGAAGGGTCTAGTGATTTGCCTATTaaaaccaaaagtattcaaCTGAAATCTGAAGAATGTGAAGAAGAGGAGAACCAGATCTGCATAAAAGCTGaagaagttgaaataaaatcagaaGACGAACCGGACAGatTACAGACATCACAAGAGCAGAAGTTAAATGAATTCTGTCTTgataagaaagaaaaagacataacatcaaaacatacATCATCCGTCACAAACCACGTGGTGTTACGCAAAAATCTTTCTGCAATAAGAGGGCATGAACACGATGTATGCAattataatgctaaagaaaaaaGATTTTTAAAGAAACCTATGTTGATACACAAGAGTCAttcagaaatacagtggtatAAATGTGACTTAAGTGACTATAAAGGAAAAGACAAAAGTGGCTGGAAAAGACACATGGTACATAAGGATCCATCAGAGATAAATTGGTATacatgtgatttatgtgactataagtcaaaaCTTAAAACCCATTTGGAACGTCACTTgatgacacataaggatccatCAGAGATACATTGGTATGAATGTGAGTTATGCGGTCACAAGTCAAAGCTTAGAAGCCATTTGAAAATTCACATgatgacacataaggatccttcagagataacaTGGTTTAcatgtgatttatgcgactaTAAGTCAAAGTATAAAAGCGCTTTGAAGAGTCACACATTGATACATAAGGATCCTACAGAAATACAGTGGTATGAATGTGGCTTATGTGACTataaaggaaaagaaaaatgtcGCTGGAAAAAACACATGATGGTACATAAGGATCCATCAGAGATAAATTGGTATacatgtgatttatgtgactataagtcaaaaCTTAAAACCCATTTGGAACGTCACTTgatgacacataaggatcctgcAGAGATaaattggtataaatgtgatttatgtggtCACAAGTCGAAGCGTAAAAGCCATTTGATAGCTCACATgatgacacataaggatccatCAGAGATACATTGGTATGAATGTGAGTTATGCGGTCACAAGTCAAAGCTTAGAAGCCATTTGAAAATTCACATgatgacacataaggatccttcagagataacaTGGTTTAcatgtgatttatgcgactaTAAGTCAAAGTATAAAAGCACTTTGAAGAGTCACACATTGATACATAAAGATCCCACAGAAATACAGTGGTATGAATGTGGCTTATGTGACTataaaggaaaagaaaaatgtgGCTGGAAAAAACACATGATGAAATACAGTGGTATGAATGTGGCTTATAAGCATCCTACAGAAATACAGTGGGATGAATATGTTTTATGCAACTATAAGTTGAGGGACAAAACCAGTTTGAAGCCTCACACACTGAGTTGTAAGGATCTTACAGAAGTACAGTGGCATGAATGTGGTTTATGTGAATATAAGGGAAAACagaaaattgttttgaaaagaCATGCGAAACATAAGGATCCTttagagataaaatggtattgttatatgaatattatcgGCCTGGTATTTGGTGAGCTGAGCGAATTTGGAACTGCCAGCTGTCACGTTCATTCTATTGTGGAGCATGAATAA
Protein Sequence
MENIEIKFCRLCFKTINDVNFKVIGTWARDMLDVLLLPLNLENGTKYFMCNGCYEKACAALKFKSTCLDTEDSIFPHVNCEGVINLQEIYFKDKGNEQLINISNGQKICRLCMLLVSGKYIFFHDLEKYMILIYIPELDFSATKDPVICMPCFEYLDTHSCFIKSCLELEKKRKHFCCSGDGSSRVEGSSDLPIKTKSIQLKSEECEEEENQICIKAEEVEIKSEDEPDRLQTSQEQKLNEFCLDKKEKDITSKHTSSVTNHVVLRKNLSAIRGHEHDVCNYNAKEKRFLKKPMLIHKSHSEIQWYKCDLSDYKGKDKSGWKRHMVHKDPSEINWYTCDLCDYKSKLKTHLERHLMTHKDPSEIHWYECELCGHKSKLRSHLKIHMMTHKDPSEITWFTCDLCDYKSKYKSALKSHTLIHKDPTEIQWYECGLCDYKGKEKCRWKKHMMVHKDPSEINWYTCDLCDYKSKLKTHLERHLMTHKDPAEINWYKCDLCGHKSKRKSHLIAHMMTHKDPSEIHWYECELCGHKSKLRSHLKIHMMTHKDPSEITWFTCDLCDYKSKYKSTLKSHTLIHKDPTEIQWYECGLCDYKGKEKCGWKKHMMKYSGMNVAYKHPTEIQWDEYVLCNYKLRDKTSLKPHTLSCKDLTEVQWHECGLCEYKGKQKIVLKRHAKHKDPLEIKWYCYMNIIGLVFGELSEFGTASCHVHSIVEHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-