Phis028940.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonocherus hispidulus
Gene Symbol
-
Assembly
GCA_963924545.1
Location
OZ004697.1:446495-449935[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.038 3.9 9.7 6.6 1 23 268 290 268 290 0.98
2 10 0.00018 0.018 17.1 6.5 1 23 299 321 299 321 0.99
3 10 7.4e-06 0.00075 21.4 4.8 1 23 330 352 330 352 0.97
4 10 0.00027 0.028 16.5 1.0 1 23 361 383 361 383 0.98
5 10 0.014 1.4 11.1 3.6 1 23 392 414 392 414 0.95
6 10 4.3e-05 0.0044 19.0 0.5 1 23 454 476 454 476 0.99
7 10 0.0022 0.22 13.6 2.4 3 23 487 507 486 507 0.98
8 10 0.0016 0.17 14.0 2.3 1 23 516 538 516 538 0.96
9 10 0.00016 0.017 17.2 2.1 1 23 547 569 547 569 0.98
10 10 4.2 4.2e+02 3.3 6.7 1 23 578 600 578 600 0.95

Sequence Information

Coding Sequence
ATGGACAACTCTGAGAAACAGTTGTGTGGCCTTTGCCTAACTAGTTTTAACAATGATAACCTCAAGGTAATAGAAGGAATTACAAAAGACATTTTAGACATTCATCTTAAGCTGGTGTTTAATGGTGAGGGTAAACGTGTAGTCTGTAGTGTCTGTTCTCTAAAGCTACAGGCTGCGTGGGAATTTAAATCAACATGTATCAATACTGACAAAGTTATTATTCCTTATGTTGATCGTGCAGAAGAATTTCCCGCAGATTTAAAAGAGATATATCTAAAGGAAAGAGGATGTAAACAATTAACCAGTATGGAGAAAGATCAGATGGTATGTAGACTATGCATGCGGCTAGTTGATGGCGAATTTAGGTCATTAGAGGAAATAGCTGTtgacataattcaaaattatattccaGAAGTGaattttagtGTCACCAAGGATCCGGTGATTTGTAAGCCCTGTTTCGATTCTCTTCACACCCATAATGTGTTCATAAAGAGCTGCATGGATGAATGGGAAGAACAAAAACCTTTTTGCGTTGATGGGGGTAAAAGTAGTGAACTTGGAGGGCCTTCGGTCGATGTGCCTAATAAAATTGAAGACATTCAAGTGAAAACCGAAGTTGATGAAGAGGAGAATGACTTTTTCATAAAAACTGAAGAACTTGAATTAAAATCAGAGGAATGTGAACCGGATAGatttcaGTCATCAGAAGATCTGAAGTCGAATAAAGCCTGCCTTGTCGGTAGAAATAATGGCAAGAGAATATTGTCTGTCGGCCGCGATTCAGTCGATAGACAACAGCACAAGTGCAATCTCTGTAACTATAGTTCACAACATCGATATGATTTCAGCAGCCACATGCTGACACATAAACATCGATCGGAAATTGAATGGTACAAATGCGATTTATGCCACTATAAGTCAAAGCACTTGGACAATTTGAAGAaacatatgctgacacataaagaTCTGTCGGAAATACAGAGGCACGAATGTGAATTGTGcggcaataaatttaaaaccaaatataatttaaaaaagcacATGTTCACGCATAAAAGTCCTTCGGAAATACACTGGTATGAATGTGAATTGTGCGGCAGTAAATTTAGAACCAAAACTGACGTGAACAGGCACTCATTGACGCATACAAATTCATCGGAAATTATGTGGCACGAATGCCGTTTGTGCGACTTTAAGTCAAAAtacaaaagttctttaaaaacCCACATGGTATTACATAAAAATCCCTCGGAGATACGGTGGCACGAGTGCCATTTATGCTGTTATAAGGCAAAGCGCAAAAACCATTTGACGAATCACTTGCTGATACACAAAGATTCTTCGGAAATTCTATGGTATGAATGCGATTTGTGTGGCAATAAACTGAAGGGCAAATACAATTTAGAAAAGCACATGTTGACTCATAGAAATCCCTCGGAAATACAGTGGCACGGATGCGACCTGTGCGGCAAAAAATTTAAAGCCAAACCGCATATGAAGCGGCACTCGTTGACACATAAAAATTCTTTGGTGACTATGTGGTATGAATGCCATGTGTGCGAGTTCAAATCGAAGTATAAAAGTTCGTTAGAGACGCACATGGTGTTACATAAGAATCCTTCGCAAATACAGTGGCATGAATGCGATTTATGCGACTATAAGTCAAAGCAAAAAGGCAGTTTGAAGTTGCACATGCTTACACATAAAGATCCATCGGAGATACAGTGGCACAAATGCCGTTTGTGTCACTTTCagtcaaaatacaaaaaatcttTAGAGAATCACAAGGCATTGCATAAAAATTCTTCTTCAAGAGTGCAGTGCGTCGATGAAAGCGAAATGCAAAATTGA
Protein Sequence
MDNSEKQLCGLCLTSFNNDNLKVIEGITKDILDIHLKLVFNGEGKRVVCSVCSLKLQAAWEFKSTCINTDKVIIPYVDRAEEFPADLKEIYLKERGCKQLTSMEKDQMVCRLCMRLVDGEFRSLEEIAVDIIQNYIPEVNFSVTKDPVICKPCFDSLHTHNVFIKSCMDEWEEQKPFCVDGGKSSELGGPSVDVPNKIEDIQVKTEVDEEENDFFIKTEELELKSEECEPDRFQSSEDLKSNKACLVGRNNGKRILSVGRDSVDRQQHKCNLCNYSSQHRYDFSSHMLTHKHRSEIEWYKCDLCHYKSKHLDNLKKHMLTHKDLSEIQRHECELCGNKFKTKYNLKKHMFTHKSPSEIHWYECELCGSKFRTKTDVNRHSLTHTNSSEIMWHECRLCDFKSKYKSSLKTHMVLHKNPSEIRWHECHLCCYKAKRKNHLTNHLLIHKDSSEILWYECDLCGNKLKGKYNLEKHMLTHRNPSEIQWHGCDLCGKKFKAKPHMKRHSLTHKNSLVTMWYECHVCEFKSKYKSSLETHMVLHKNPSQIQWHECDLCDYKSKQKGSLKLHMLTHKDPSEIQWHKCRLCHFQSKYKKSLENHKALHKNSSSRVQCVDESEMQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-