Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004697.1:1285856-1291921[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00036 0.037 16.1 0.5 1 23 269 291 269 291 0.98

2 14 0.43 44 6.4 1.0 2 23 306 327 305 327 0.97

3 14 0.014 1.4 11.1 2.8 1 23 336 358 336 358 0.99

4 14 0.012 1.2 11.3 3.2 1 23 364 386 364 386 0.99

5 14 0.15 15 7.9 2.4 2 23 396 418 395 418 0.95

6 14 0.035 3.6 9.8 3.3 1 23 427 449 427 449 0.98

7 14 8.5 8.6e+02 2.3 2.6 1 23 458 480 458 480 0.95

8 14 0.27 27 7.1 1.6 2 23 490 511 489 511 0.97

9 14 2.7e-06 0.00027 22.8 0.9 1 23 520 542 520 542 0.97

10 14 0.19 19 7.5 0.4 2 23 556 578 555 578 0.95

11 14 0.00047 0.048 15.7 0.7 1 23 587 609 587 609 0.98

12 14 3.5 3.5e+02 3.6 2.6 1 23 618 640 618 640 0.91

13 14 0.00012 0.012 17.6 0.5 1 23 649 671 649 671 0.98

14 14 8.4e-05 0.0085 18.1 2.8 1 23 680 702 680 703 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00036	0.037	16.1	0.5	1	23	269	291	269	291	0.98
2	14	0.43	44	6.4	1.0	2	23	306	327	305	327	0.97
3	14	0.014	1.4	11.1	2.8	1	23	336	358	336	358	0.99
4	14	0.012	1.2	11.3	3.2	1	23	364	386	364	386	0.99
5	14	0.15	15	7.9	2.4	2	23	396	418	395	418	0.95
6	14	0.035	3.6	9.8	3.3	1	23	427	449	427	449	0.98
7	14	8.5	8.6e+02	2.3	2.6	1	23	458	480	458	480	0.95
8	14	0.27	27	7.1	1.6	2	23	490	511	489	511	0.97
9	14	2.7e-06	0.00027	22.8	0.9	1	23	520	542	520	542	0.97
10	14	0.19	19	7.5	0.4	2	23	556	578	555	578	0.95
11	14	0.00047	0.048	15.7	0.7	1	23	587	609	587	609	0.98
12	14	3.5	3.5e+02	3.6	2.6	1	23	618	640	618	640	0.91
13	14	0.00012	0.012	17.6	0.5	1	23	649	671	649	671	0.98
14	14	8.4e-05	0.0085	18.1	2.8	1	23	680	702	680	703	0.96

Sequence Information

Coding Sequence: ATGGAAAGTTTAAAGAAACAGAATTGTAGGCTTTGCCTTTCTGCTATAAGGGGTGAAAACTTTGAAGAAATCGACGATAGTACAAAAGATATTTTAGATATTCTCTTGCTGAAGCTGaaccTTGAGGACCAGAGCAAACAAGTCGTGTGTAGTCCTTGTTATGCAAAATTATTTGCAGCAGTGGAATTTAAGTCGACATGTCTCGGTACTGATAACACTATTATCCCATAtgttgattttgaaaattttgtgccAGTCAGTTTAGAAGAAATATATATGAAAGAAAAGGCGAACAGTATTTTAAATGATCAGAGAGTATGTCGACTTTGTATGCACCTGACAGAAGACAAATTTATGCCAATACACGAAGTTGAAGTTGatatgtttgaaaattacgttccTGAAATGaatttcagAGTGACCAAAAATCCAGTCGTGTGTCAACCATGTGTTCGTTCTCTCAGCATCCACAACGCTTTTCTAAAGAATTGCATGGACGTCGACAAGAAGACAAAAAATATAGGCCATAGTCAGGTCGAGAAGCGTCATATCTCGGGACTATCATCCGATTCCTGTGGTAAAATCAAACCTGAAAGCCGGGACAGTGAGGGAAAGTTGACTGAAAATGTATGCACCAAAATAAAATGGCAAGGCAGTAAGAAAAGATTACTTGTGTATAACTACACCAAGGAAGAAATGAAAAGAAGAAAACACCCGTGCTCCCGCTGCCCGTACCGGGCCTTGGATAAAAAGGCTCTCAAGATACACGCCGTACTTCACATGGACCCCCCGAAAGCGAAGCGGTTCACATGCGACATATGCACTTACGCTACCATATACAGCAGCCGCTTAAAGCGCCACATAGCTACGCACTCGGCTACGCATCGCAAGGAACCCCCAAAAATCGTGTACAAGAAATGTCCCTCGTGCAACTTTCAAACTAGAATCACGAGTGTCTTGAAGAAACACATGGATGTTCACAAGGACGAGTCGGAAGTGAAAATGTACAAGTGCGAGTACTGCTTGTTCAAAACTAGGCACCCGGCAAACATCGACTCGCATATGCGGAAGCATCAGACGACGTACGACTATCGGTGCGAGACGTGCCCGTTTAAGTCCAAGTACCTGGAGAGTTACCGGAGACATCTAAAGCGGCACAAAAATCCGTCCGAGCAAGAGTTCTTACGCTGCGCCGACTGCGATTATAAAACGCTGTATAAACATCAGTTGAAGGTCCACGTTCGGAAGACCCACATGAACCCGTCCCAAGCCATGAAGTATGAGTGCGACAAGTGCCAGTTCAGCACGTTCTACAAATTCGACTTCAACAGGCACTTGGCCAAACACAAAGACCGATCCGAGGTCACCATGTACAAGTGCGACTCTTGCACGTACGAAACCCTGGTCAAGTATTGTCTCAAGAGACACGAGATAGTGCACAAGGACGCATCACAGATCGAAATGGTCAAGTGCGAGCTCTGCCCGTATGAGGGCAAGCACAAGCGTGACCTCCGTTTTCACATGTTGCGCCACGTGGACCCTTCCAAGGTTGAAAAGTTTCCTTGCGAGATATGCGGCGTGACTTTCAACAGGAAATACAATTTTAAGACACACCTGGCGAAGCATCGCGCCCGCAGCGGGGGGTCTACCGAACGTCAGTTGCTGTACTGCGCGGAGTGCGATTTTAAGACGCCGTACAAATCCCAGTTGATCTTCCACATCAAGAGAATACACATGGATCCCTCGCAGGTTAGAAAGTACAAGTGCGACGAGTGTAGCTACTCCACTGTCTTCAGGTCCGCACTCCGCAACCACACGTTGGTGCACAAGGACCGTTCGGAAGTCACAGTGTTCAAGTGCGAGCTGTGCCCGTTCGAAACGCTCTTTAAAAGCCACTTCAAGAAGCATGGAGTGGTGCATAAGGATGCGTCCGAGGTGGTAGTGTTCAAGTGCGAGGTTTGCCCTTACGAGACGAGATTCAGCTCGAGCCTCAGAGCGCATATGGTGAGACATACGGATCCTCCACAGGTCGACCGGTTTCGGTGCGGGCTGTGTGAGAACAGTTATAAAAGAAAGAGCAGCTTAAGGGTACATATGGCGAAGCACCATAACCGTAGAAAAGTGCGCAAGTAA
Protein Sequence: MESLKKQNCRLCLSAIRGENFEEIDDSTKDILDILLLKLNLEDQSKQVVCSPCYAKLFAAVEFKSTCLGTDNTIIPYVDFENFVPVSLEEIYMKEKANSILNDQRVCRLCMHLTEDKFMPIHEVEVDMFENYVPEMNFRVTKNPVVCQPCVRSLSIHNAFLKNCMDVDKKTKNIGHSQVEKRHISGLSSDSCGKIKPESRDSEGKLTENVCTKIKWQGSKKRLLVYNYTKEEMKRRKHPCSRCPYRALDKKALKIHAVLHMDPPKAKRFTCDICTYATIYSSRLKRHIATHSATHRKEPPKIVYKKCPSCNFQTRITSVLKKHMDVHKDESEVKMYKCEYCLFKTRHPANIDSHMRKHQTTYDYRCETCPFKSKYLESYRRHLKRHKNPSEQEFLRCADCDYKTLYKHQLKVHVRKTHMNPSQAMKYECDKCQFSTFYKFDFNRHLAKHKDRSEVTMYKCDSCTYETLVKYCLKRHEIVHKDASQIEMVKCELCPYEGKHKRDLRFHMLRHVDPSKVEKFPCEICGVTFNRKYNFKTHLAKHRARSGGSTERQLLYCAECDFKTPYKSQLIFHIKRIHMDPSQVRKYKCDECSYSTVFRSALRNHTLVHKDRSEVTVFKCELCPFETLFKSHFKKHGVVHKDASEVVVFKCEVCPYETRFSSSLRAHMVRHTDPPQVDRFRCGLCENSYKRKSSLRVHMAKHHNRRKVRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -