Phis029139.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonocherus hispidulus
Gene Symbol
-
Assembly
GCA_963924545.1
Location
OZ004697.1:2090168-2093080[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.0013 0.13 14.4 0.2 1 23 273 295 273 295 0.98
2 10 0.00058 0.059 15.4 4.6 1 23 304 326 304 326 0.99
3 10 1.5 1.5e+02 4.7 1.7 1 23 335 356 335 356 0.95
4 10 7e-05 0.0071 18.3 2.4 1 23 365 387 365 387 0.99
5 10 5.4e-05 0.0055 18.7 4.2 1 23 396 418 396 418 0.99
6 10 0.00038 0.039 16.0 1.4 1 23 427 449 427 449 0.98
7 10 0.0057 0.57 12.3 3.7 1 23 458 480 458 480 0.98
8 10 0.016 1.7 10.9 1.0 1 23 489 511 489 511 0.98
9 10 0.17 17 7.7 4.4 1 23 520 542 520 542 0.96
10 10 0.00075 0.076 15.1 2.5 1 23 580 602 580 602 0.98

Sequence Information

Coding Sequence
ATGGAAAATAAGAAGCAGATTTGTAGACTCTGTCTAAATATTATAACAGatgataattttaaagtaatagaAGAATCTTTAATGGAAATTTTAAGTGTTGTTTCTCTCAAGCTGAACTTGGAGAAAAACGGAGACATAATATGCAGTACCtgttctataaaattatttgccGCTTTCGATTTTAAATCCACCTGTCTCTACGTCGAGGACAAGATTGTTCCTTTCGTTAAGACTGATCAAACGTCCTCGGTTGATTTAAGAGAAGTTTATTTTAAGGAGCAAGAAAATGAGCATAAAGACAAAATATTCGAAGATCAGAAAGTATGCAGATTGTGTATGCAGATGGGAAACAATGGATTTGTGTCATTATGTGAAGTGAAGCTTGATATGGTTTTCAAATATATTCCCGAGATTAATTTCAGTATCACCAAAGACCCTGTCGTTTGCAAGTCATGTTTTGATGCTCTTCTCGTCCATATCgctttcataaaaaaatgttcagatgaagaagaaaaatgtaaaagtatttaTGATGGTAAAGTAACCGATAGTCAACCTTTCATACAACCGTTCGAATTAGTTAAAATTGAGGACACTGAAATAAAACAAGAGATCTGTGAAGTGGAAGGGGATGGTTCAATAAAGGCTGAAGGCGTTCAAATGGATTCGGGAATAAATGAACAAGGCGATAAAGAATTATTGATTAAAACTGAAGATATCGAGATTAAAGCCGAAGACAATCGACAAGGAAGCTGTGGAATATTGCCTTTAGACGCATCTTGCGGAGCTAACGGCAGGCCTTCGCAAATAAAAGGATTTAAATGTTACATATGTGACTATAAAAGTATAAACAAAAGAGATGTCGAAGCACATATGATCATCCACAGAGACCGTACAAGCCCAGATGCGTACAAATGCCTTCACTGCGACTATAGAACCAAGTATCTGCGTGGCCTTAAGAAGCACATGTTGACGCACAAAGACGTCGCAGAAATAAAGTGGTACAATTGTAATTTGTGTTCGTACAAATCGAAGAAAAAGTATTTGGGCAGCCACATGCTGATACACAAAGACGCCTCGGAGATCCGATGGTACAGATGCCGCTTGTGTAACTACAAGTCGAAACGTAAAGGCAACCTGACGCAACACATTTTGACGCATAAGAACCCTTCCGAGATAGAATGGTACGAATgcgatttatgcaactataaaacGAGGCACAAGAACAATCTGAAACAGCACATGTTGACGCATACTAATGCTTCGGAGATACACTGGTACAAGTGCGATTTGTGTAGCTATAAGTCGAAATACAAGAGCGACTTGAAAGGGCACATGTTGATACATAAGAGTCCTTCGGAAATTGAGTGGTACGAATGCGATTTATGCGACTACAAGTcgaaatataagaaatatttaaagcAACACAAACTGAAGCATAAAAATCCTTCAGAGATAGAATGGTACGAATGCGATTTCTGTAACTATAAATCGGAGCTCAAAGACAGGTTGAAAAGCCACATGCTGATACACAAAGACTCCTCGGAAATTCAGTGGCACGAATGCGGTTTGTGCGATTTTAAGTCGAAATACAGATGCGATTTAAAAAGGCACGTCGGGACACACGAAGATCCTTTGGACGTACAACAGCAGAAACGCCATTTATGTGCCTGCAAGTCGGAGGAGATACAAGAGAGGCATATGCTGATTCAAAAAAATGATATGCAAGTTCATTGGTACGAATGTTACTCGTGTGACTATAAGTCGAAGCGAAGAAGTAACTTCAGAAGGCACGTCTTGATACACCAAGGCTCTTTGGAAATAAAGTGA
Protein Sequence
MENKKQICRLCLNIITDDNFKVIEESLMEILSVVSLKLNLEKNGDIICSTCSIKLFAAFDFKSTCLYVEDKIVPFVKTDQTSSVDLREVYFKEQENEHKDKIFEDQKVCRLCMQMGNNGFVSLCEVKLDMVFKYIPEINFSITKDPVVCKSCFDALLVHIAFIKKCSDEEEKCKSIYDGKVTDSQPFIQPFELVKIEDTEIKQEICEVEGDGSIKAEGVQMDSGINEQGDKELLIKTEDIEIKAEDNRQGSCGILPLDASCGANGRPSQIKGFKCYICDYKSINKRDVEAHMIIHRDRTSPDAYKCLHCDYRTKYLRGLKKHMLTHKDVAEIKWYNCNLCSYKSKKKYLGSHMLIHKDASEIRWYRCRLCNYKSKRKGNLTQHILTHKNPSEIEWYECDLCNYKTRHKNNLKQHMLTHTNASEIHWYKCDLCSYKSKYKSDLKGHMLIHKSPSEIEWYECDLCDYKSKYKKYLKQHKLKHKNPSEIEWYECDFCNYKSELKDRLKSHMLIHKDSSEIQWHECGLCDFKSKYRCDLKRHVGTHEDPLDVQQQKRHLCACKSEEIQERHMLIQKNDMQVHWYECYSCDYKSKRRSNFRRHVLIHQGSLEIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-