Phis035882.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004697.1:46591524-46604258[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.6 7.7e+02 2.5 0.1 4 23 317 337 317 337 0.91 2 11 0.075 7.6 8.8 1.7 2 23 362 383 362 384 0.93 3 11 0.028 2.9 10.1 6.2 1 22 390 411 390 411 0.96 4 11 0.0039 0.4 12.8 1.6 2 23 446 467 445 467 0.96 5 11 2.5e-05 0.0025 19.8 0.2 3 23 480 500 479 500 0.99 6 11 1.9e-05 0.0019 20.1 2.4 3 23 508 529 506 529 0.95 7 11 5.6e-05 0.0057 18.6 0.5 1 23 535 558 535 558 0.97 8 11 3.1e-05 0.0031 19.5 4.1 1 23 564 586 564 586 0.98 9 11 0.0024 0.24 13.5 2.1 2 23 613 635 612 635 0.96 10 11 1 1.1e+02 5.2 2.9 2 20 673 691 672 694 0.88 11 11 0.00038 0.039 16.0 1.5 3 23 702 723 701 723 0.97
Sequence Information
- Coding Sequence
- ATGAAGTGCAGAACGTGTTTCCAAGTATTGGACTTAAATTACAGTTCacctttacaaaaaaaattatcgatTGGAAAAACCATTCAGGAAATGTTACTACTTTTTATTCCAGAAATGGTTAAGTCGAAGACAGTTGGTGATTTTATTTGTAGTAATTGTATGGATGCAATACAGACCTTTCTAAACTTCATTGAAAGATTATTTATTGTTGAAAAGCATTTGAAAGAAGAAGAGTATAACCACAATCTGAAACAACAAATAATTTCAGAAGataatttaaaaaacaaatatgtaGACCGCAATTGTAggctattaaaaataattcccGTTACAATTGCACATCAGGGTGGAGCAAAGTTTGTACAAccaaaattacagctttctgatgaaataataaagttgaatCGGCCAGTGAGGACATATTCCCGTAAAGATAGAAGTAGCTTTGTGCTAACACCGAAGAAAGAGccaCCTGATCCGCCAGATTGTAGTGCCACAGATGTACAAACTAACGCACATCCAGTGATTAGAACTTTATCTGATGAAGGTCATGTGACTATAAAGTACGagGATTTGGCAGCTACTAGTTTGTCCGAAGAGTTTCCAAGAACTAATTCCTTCAAATTATTTGCTGAGAAACCTCTTTCTGATGAAACGATGTTGGCAAATTTTGCAGCAATTgtttcaaaagaaaatattgcaaatacagaggacggtataactttaaataagAGCCGAGGTACTGGCGCTCATATAAAAGCTTTGATGTCTGTCACAAACTCGCAAGTGAGTTTGGATCACGATCGAGTGATAAGTATCACTAGAACTAGTGAAGAGGTTGCCGATTTCCTCAAGAAATTTCCGCAATTTAAACTAAACTTAGCGAGTTCGCAGTCACTTTCAGAAAGCAAAAGGATTCTATTTCTTGGTGAAGCGGTTGACCGCAGGCCAGAATGCCAAGTTTCGTTTCCCTCCCAACATGCCAGCAGGGATCACCTCAAGCAGATACACCCGAACAGCGTATATCCTGAACCAGAGACGAAACCTACTTTCACTAATGTATTTAGATTCAAACCATTGAATACCTGCCCTGTGTGCGAAGCTCAATTTAAAACAGTAAAATTGTTAGATAAACATATTGTCCACCACCATAAGGAATATCATCGCTTTAAATGTGAACACTGCGACGCAAAATTCAAAAGAAAATGCCGTTATAGCCTGCATATGAGAAGGTACGAGATGTATCAGGACTGCAGTGCTAAAAAGTGTCATATGTGTAACGAAATaGTTTTCAAGCACACATATAAAGAACACTATGCTACTCACAAGAACATCGAGtgtaatatatgtaataagaaATTCTTAAGAGTCGGACATCTTAATAGCCATCGTTTAAGCCATCAAAACCAAACAGGAAAAAAGACCACGGAGGCACTTTGTCCAGTTTGTGGTAAATTGTTGAGTGATAGATCAAATTTACGGTTGCACATGATTACCCATTCGCAAAAACGCAACCATCTTTGTGATAAGTGTTCAAAGGCTTTCAAGACAATTAGCAGTCTTAAGAAACATATGGAAACGGTACATGTTGACACCAAAAATTACCAATGTGCTATATGTGGAAAAAGAGCCAAATCGCAGTCGGCTTTGCAACTTCACAAGAGgttaaaaCATTCAGATGTGTATTCACATGTCTGTCACATTTGTGGTAAAGGCTTTAATCGAGGTGACTACTACAGACGACACATAAAGAAACATATAACTCAAGGCCATGGTGTCACTGGTAGGAACCGAAAATACCTCTTCCCATCATTGAAAAGAACTGatttaccCTTGCCCTGTAAATATTGCAACAGTAAATTTAGATACATTGGCCACCTGAGATCACATCTATTAACGAGTCATTTGAAGAGTGCTCCCAGACCAAAATGTCGATATTGCGATATGACGTTCTACTGTGAAGCAAATAAGTGTAGGCATGAAAAGAGGCACAAGGATCCTAAGGCATTTGAATTAACttgtaaggTTTGTTACAATCGCTTCAATTCTAAGAAGGAGCTGGATGCGCACTGCGCAAAACACAGGGACTCTCAGAAACGTATATGTGGTGAATGTGGAGAAACGTTTCCTAGCAAGTATTTTCTCGTACACCACAAGCGCAAAAAACATTTAACCGCCCAAGAAGttactgaaaaagaaaaaatggtTTTGTTAAAGGAGGGTTTGAGTGAATACACCCTATAA
- Protein Sequence
- MKCRTCFQVLDLNYSSPLQKKLSIGKTIQEMLLLFIPEMVKSKTVGDFICSNCMDAIQTFLNFIERLFIVEKHLKEEEYNHNLKQQIISEDNLKNKYVDRNCRLLKIIPVTIAHQGGAKFVQPKLQLSDEIIKLNRPVRTYSRKDRSSFVLTPKKEPPDPPDCSATDVQTNAHPVIRTLSDEGHVTIKYEDLAATSLSEEFPRTNSFKLFAEKPLSDETMLANFAAIVSKENIANTEDGITLNKSRGTGAHIKALMSVTNSQVSLDHDRVISITRTSEEVADFLKKFPQFKLNLASSQSLSESKRILFLGEAVDRRPECQVSFPSQHASRDHLKQIHPNSVYPEPETKPTFTNVFRFKPLNTCPVCEAQFKTVKLLDKHIVHHHKEYHRFKCEHCDAKFKRKCRYSLHMRRYEMYQDCSAKKCHMCNEIVFKHTYKEHYATHKNIECNICNKKFLRVGHLNSHRLSHQNQTGKKTTEALCPVCGKLLSDRSNLRLHMITHSQKRNHLCDKCSKAFKTISSLKKHMETVHVDTKNYQCAICGKRAKSQSALQLHKRLKHSDVYSHVCHICGKGFNRGDYYRRHIKKHITQGHGVTGRNRKYLFPSLKRTDLPLPCKYCNSKFRYIGHLRSHLLTSHLKSAPRPKCRYCDMTFYCEANKCRHEKRHKDPKAFELTCKVCYNRFNSKKELDAHCAKHRDSQKRICGECGETFPSKYFLVHHKRKKHLTAQEVTEKEKMVLLKEGLSEYTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -