Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004692.1:115907460-115908530[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.039 4 9.7 2.5 2 23 103 124 102 124 0.96

2 9 6.7 6.8e+02 2.7 4.6 1 23 130 152 130 152 0.95

3 9 0.034 3.5 9.9 5.8 1 23 155 177 155 177 0.98

4 9 1.9e-06 0.00019 23.3 1.8 1 23 183 206 183 206 0.97

5 9 0.032 3.2 10.0 7.2 1 19 215 233 215 238 0.93

6 9 2.9e-05 0.0029 19.6 0.1 2 23 248 269 248 269 0.97

7 9 2.5e-05 0.0025 19.7 2.9 1 23 275 297 275 297 0.96

8 9 6.1e-06 0.00062 21.7 3.8 1 23 303 325 303 325 0.99

9 9 0.002 0.2 13.7 0.2 1 21 331 351 331 352 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.039	4	9.7	2.5	2	23	103	124	102	124	0.96
2	9	6.7	6.8e+02	2.7	4.6	1	23	130	152	130	152	0.95
3	9	0.034	3.5	9.9	5.8	1	23	155	177	155	177	0.98
4	9	1.9e-06	0.00019	23.3	1.8	1	23	183	206	183	206	0.97
5	9	0.032	3.2	10.0	7.2	1	19	215	233	215	238	0.93
6	9	2.9e-05	0.0029	19.6	0.1	2	23	248	269	248	269	0.97
7	9	2.5e-05	0.0025	19.7	2.9	1	23	275	297	275	297	0.96
8	9	6.1e-06	0.00062	21.7	3.8	1	23	303	325	303	325	0.99
9	9	0.002	0.2	13.7	0.2	1	21	331	351	331	352	0.95

Sequence Information

Coding Sequence: ATGCCCAAAAAGGTAGGAAGACCTGCTAAAcgtaatcaaaaaaatataaaaatagaaaatggcAAGCCTAAACCAAGTCCTAATGAACACGCTTCCGATAAAGTAATAGATGCGAAAAAAAACTCAACAAACAATGGTACTCTAAAGACTGAAATTGAAGATGAAGCAgttgcgaaaactacaaatCTTGCCAAAAAGACCAAGACTATAAAAAGAAAGAAGCGAAAATCAGACCTTGACGACGACGAAATAGACAAATACCCCTTAGACAAGTTCATAAACCTCAACGAGATTCAATTACCAATACATTGCAAATATTGCAACTCGACCTTTGATAGTAGCGTAGACTTTGTGCTGCATTCTAAAAAGCACACCGAAGATGGCAGGTACTCTTGTCACCTTTGCGATtataagaagaagaagaaactcACAATCTTACAGCATATAAAACGGCATGACTCGTTCAAATGCATGCTGTGTAGAAAAGTCTTTAAGAGAAAAAGATGCGCTGTCAAACACTCTAAAATGCACGCCACTAAAAAGCTCTTTCAGTGTGAGATTTGTGGGAAAGAACTGAGCAACAATAAAAACCTGAAGCACCACCGCCAGATGGTGCACTTGGCGGGGAAGCCAGTCATCTACCACGACTGCACCATCtgtcataaaaaatacaaatcggTCAGTAGCCTGAGGAGGCACTGCTCTTTCAATCACAAGGAACTAGGCATAGATATGTCCGCTGTGTGTGAAATTTGTGGGAAGACCATTTCCACCAAGGGCGGTCTTCTGATCCACCTTAAAACCCACAAAGAGAAAAGGCCGCATGCCTGCCACCTGTGCTCGAAAACCTTCGTGAGTCGAACACTTTTGAATGCTCACATGGTGACTCACACTGGAGAGAAGCCATATATGTGTAAATATTGTGGGAAGAGATACGGCCACAGTTCTGCTTACCGATACCATATTAGGACACATACTGGCGATCGACCTTATAGCTGTCAGTTTTGTGGGAAGGGATTCATTGCGAATGccaataagaaaatacatatgaAAAGCTGTTTTAAAAGTTGA
Protein Sequence: MPKKVGRPAKRNQKNIKIENGKPKPSPNEHASDKVIDAKKNSTNNGTLKTEIEDEAVAKTTNLAKKTKTIKRKKRKSDLDDDEIDKYPLDKFINLNEIQLPIHCKYCNSTFDSSVDFVLHSKKHTEDGRYSCHLCDYKKKKKLTILQHIKRHDSFKCMLCRKVFKRKRCAVKHSKMHATKKLFQCEICGKELSNNKNLKHHRQMVHLAGKPVIYHDCTICHKKYKSVSSLRRHCSFNHKELGIDMSAVCEICGKTISTKGGLLIHLKTHKEKRPHACHLCSKTFVSRTLLNAHMVTHTGEKPYMCKYCGKRYGHSSAYRYHIRTHTGDRPYSCQFCGKGFIANANKKIHMKSCFKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -