Phis029019.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004697.1:1050931-1052795[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00054 0.054 15.6 0.6 2 23 115 136 114 136 0.97 2 12 0.0033 0.34 13.1 2.7 2 23 146 167 145 167 0.96 3 12 0.18 18 7.6 1.1 1 20 176 195 176 198 0.93 4 12 0.19 19 7.5 4.6 1 23 207 229 207 229 0.97 5 12 0.0034 0.34 13.0 1.0 1 23 238 260 238 260 0.98 6 12 0.00023 0.023 16.7 1.3 1 23 269 291 269 291 0.98 7 12 1.5 1.5e+02 4.7 4.3 1 19 300 318 300 322 0.96 8 12 4.6e-05 0.0046 18.9 1.5 1 23 331 353 331 353 0.98 9 12 4e-05 0.0041 19.1 0.9 2 23 363 384 363 384 0.98 10 12 0.025 2.5 10.3 0.9 1 23 393 415 393 415 0.98 11 12 0.044 4.5 9.5 0.9 1 23 424 446 424 446 0.98 12 12 0.0041 0.41 12.8 0.2 2 23 456 477 455 477 0.97
Sequence Information
- Coding Sequence
- atgtcCGTTGATATGGGAGATTGGAAGATGGATATTAAAACAGAAAACGATGTTGGAACTAACGGATTTAATGTTATATCTGAAACAGCCCCATTTTCATATATCAAAAGTGATATAAAAACGGAAGCGGATGAATTTCATGTATTTGTTCCTGGACAGCCAACAGAAGAACAGAATCCTTACGACAAACTAGATTGCAAAGTTTTCAgtcagaatataataataaaacaagaaaatccAGATATAATGCATGCGACTGATCCACATATTACAGAACCAAATCTTAAGGAAACCCCCAAGCATACATTGTCGCATACCGCTCTCTCGGAAAACAAGTTGCTACAATGCGATACTTGTGCCTACACAACAACCTACAAAAAGAATCTCATAACCCATATGTTGATCCATAAAGACAGGTCACAAATGGAAACACTAAAGTGCAATTTGTGCCAGTATAAAACGTACCGAAAAAGCTACCTTAGAAGCCATAAACTGATACATAAGAACCCGTCAGAAATAAAGATGCACAAATGCGACGTATGCCCTTTTGAATCCAGGCATAATTCCGTCCTGAAGGGGCATATGTGGGTTCACCTCGACCCCGCAGATCGACAGATGTACAATTGTGATCTATGTGACTATAGGACAAGGTGGAAGCATAAGCTCAAGAAGCACCGTTTGAGCCACGACGATCCGTCGCAGGAGCTGGCGTTTATGTGTGACGTGTGCGGGCATCGAACCAACCTAAAAGCAAGCCTCGATAAGCACTTGTTAACGCATAAACATCCCTTGGATATAAAGATGTACGACTGTAGTAAATGTGACTTTAAAACCCGTCAAATCGGCACGCTGAACAGACATATGTTGACCCATTTGGACCCCGCCGAGGCTCAAACCTACAAGTGCGAGTTGTGCAGCTACCAAACGAAATCGAAGCGTTGCATGAAGAAGCACAGTTGGGTGCACGAAGATCCAGCCAAGGCGAAAATGTTTACTTGTCTTGTGTGCGGGTACAGGGGCAGGTTTAAGTATGACCTGAAACGGCACATGTTGACGCACCAGCATCCGTTGGAAGTGCAGACCCGTAAATGTGATAATTGTGACTTTGAAACTCCGTACAGCTCGAATCTGAGAAGGCATATGCTGACACATCGCAATACTTCCAAGAAACAGTCATACAAATGTGACGTTTGTGATTTTGAAACAGACCGGAAGTTCGATATGGGGAGACACAATATGACTCATAGAGATCCGAAGCAGATAAGAATGTTTAAATGCGAATTGTGTCCGTTTGGGACAAAGTGGAAAAATAGCCTTAATAAACACTTGTTGAGGCACAAGGAGTTCCTGGAAATTACAATGCTCCAGTGTAGTGTATGTGACTTTGAAACTAGTCTAGGGTACGCGCTAAGGAGGCATATGTTGACTCATTCGAATACAAGCGAATAG
- Protein Sequence
- MSVDMGDWKMDIKTENDVGTNGFNVISETAPFSYIKSDIKTEADEFHVFVPGQPTEEQNPYDKLDCKVFSQNIIIKQENPDIMHATDPHITEPNLKETPKHTLSHTALSENKLLQCDTCAYTTTYKKNLITHMLIHKDRSQMETLKCNLCQYKTYRKSYLRSHKLIHKNPSEIKMHKCDVCPFESRHNSVLKGHMWVHLDPADRQMYNCDLCDYRTRWKHKLKKHRLSHDDPSQELAFMCDVCGHRTNLKASLDKHLLTHKHPLDIKMYDCSKCDFKTRQIGTLNRHMLTHLDPAEAQTYKCELCSYQTKSKRCMKKHSWVHEDPAKAKMFTCLVCGYRGRFKYDLKRHMLTHQHPLEVQTRKCDNCDFETPYSSNLRRHMLTHRNTSKKQSYKCDVCDFETDRKFDMGRHNMTHRDPKQIRMFKCELCPFGTKWKNSLNKHLLRHKEFLEITMLQCSVCDFETSLGYALRRHMLTHSNTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -