Phis028676.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- prdm10
- Assembly
- GCA_963924545.1
- Location
- OZ004696.1:63949793-63957507[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0004 0.04 16.0 0.1 2 23 445 466 444 466 0.96 2 12 0.0027 0.27 13.4 0.1 1 23 538 560 538 560 0.94 3 12 0.038 3.9 9.7 1.6 1 23 571 593 571 593 0.95 4 12 0.00022 0.022 16.8 0.2 2 23 606 627 605 627 0.97 5 12 0.05 5.1 9.3 3.1 2 23 636 657 635 657 0.97 6 12 0.035 3.5 9.9 0.7 1 20 664 683 664 686 0.91 7 12 0.0081 0.82 11.8 3.6 1 23 692 715 692 715 0.96 8 12 0.00092 0.093 14.8 4.9 1 23 720 742 720 742 0.97 9 12 0.0024 0.24 13.5 4.0 1 23 748 771 748 771 0.89 10 12 0.027 2.8 10.2 1.1 1 23 807 830 807 830 0.97 11 12 0.00013 0.013 17.5 2.3 1 23 852 875 852 875 0.97 12 12 0.0026 0.27 13.4 3.8 2 23 914 936 913 936 0.96
Sequence Information
- Coding Sequence
- ATGGATACCATTGTTGAGGGCCCCCCAGATGATGGGGTGCAAGATGTAAATATTGTGGATACTACAAATTGGACAGATAACCAAGGAATTGTGAATAATAATTCTACTCTCCTCTATATAGCAGTTGAATATGTGAAAGATTACAAAATGGGCAACTCTGCAGACAATGTTGTCACTCAACCAGAATCCTTCACAGATTTTGACCAGCATGTTAGTCCATTAGACCCGAATATGAGTTCGGTAGCTAGATACAGCCCCGTATATAATGAACAGTCTACCGAATTTAATCCTGTGGTTATTCATCAACTTGTTACACAAGATGCTAATACATCTAATGAGCAGTTCACTGACAACTTAAATACTGCTTCGCTTGAGACTATGCCTACTGTTCTTTGTAATAGCAATTTAAGGGAAGTTAATAATCAGTATCTACAAATGGTAGAGGAGAATGGTGGGAATATGGTTAGCAGAAGTAATACGGAAGGGCTGCAACTTGGTTCGCAGAATGAACAAGAAGTTGAACTGCTTATTACTGATGAGGCAAcggGAATTTCTTATAGTGTAAACGCCCAGGAACTTTTAGTGGAACGTTGTTTAGAGGACGAGCAGCTTTTGGAAGCTCTGGCACCTGATCCACTTTTGGAATCCGATCTGTTGACTCTAGATGACAGCACTCTAAAATCAGAATTAAATGATGACATTGACATATCGGCAGCAGTGTCAACATCGGTCGAAGCACAAGTCGTGAACAGTTATATAAATAGTTTGGCAAATAATGAAGCCAATAAGAGTTTAAATGgtgaaaatgattttaaaatggaAACTAGAAGGAATAGGCAAAACGAATTGGATCCAGAGGAACAGCTATTGTCATGTGTCTACAGTATTACAGACAAACCTATTTTGACAAGAGCAAAAGCAACTCTACCGGAATCATACTTGTATATTAATAGAGTAAACAACGAAAATGCTGTTTTTGCTAAGAAAGCCATACCTAAGAGAAGTCAGTTTGGCCCACTTGAGGGGATTTTGACTCTAAGGACTGAGAAAGTTGAAAATGAGTCGTCACCCCCGATTTTTCTCCTTGAAAGTGATGGTGCAATTTATGAAATGGACGTTTCAGACGAGAATTCCTCAAACTGGATGTGCTTTGTCCGAAAGGCCAATACTTATGAAGAACAAAATCTAGTGATAACGCAAGAAAATAACTCGATATATTTCACTACTACCAGCAATATTTTGCCGAAGCAAGAGCTGAAGGTCGGGTACAGTGCTTCGTACGCACAATATTTCGATTTGCCACTATTAGAGCCGCAAGAGGTTCACAATTGGCCGTGTTACGAGTGCTCTGAAAAATTCATTTCGTCGGAAGAGTTACAGAATCATCTGAATGTCCACGATGAAGAGAAGGACGAGAATACCAGGCCTAGAAAGAAATTGTCAAGGAACAAGAGGCGTTTGATGAAGAAATGCCAGACAGAGGCTGTGGAGTGTAACGCATGCTGCGAGATATTTTTCCAGTACAGTTATAATCTGCTTAAGAATCACGTAATAGAAAAGCATAATTATAGCCAAGGCTCCGTCGAGGATTACTTCTCCATAGTAGTGAATTATAAATGTGAGACCTGCGGGATAGGTTTCAAGTCTGAAATCTTattgaaaatacataatctcgGACATGACCCAGACTCCTCCGAAGAACAACTTTACCATGTTTGCCCTTCTTGTCTGAGGAAATTTCCCACCCAGAGGCAGTTGGTTATGCACGTGGCGCACCATGCCCTGCCTAAGATCATCGCACAACCGGAGAGAGTGAAATGTCCCGTCTGTTACAAAATGTTTGCGCTACGAGAGAGATTACAGAGACACATGCTGGTCCATGGGTCGGAAGAATCAAAACCCTTGCAGTGCAAAACTTGTAACAAGAGATTCCTGAACAACTCTGCCCTAGCTTGTCACATAAAAACCCACTTTATCGGCAAAAAGGTATTCGAATGTCCCATTTGCAAGGAGAGTTTCGATCACGTGCTGAAGCTGAAGATGCACGTTCCCAAGCATTGCCACAACAATACGTTCACGTGCCCCCACTGCAAGAAAATCTTCAAGAAGTACAGCATAATACGCAAGCATATCCGCGCTTTTCACTGCGAGAGGAAGCACACTTGTCAACACTGCTCCAAAATGTTCCCCACTTTGGATAAACTGAGGATGCACCTGTTGCGGCACTCGGATCACCGCGAGTTTTTGTGCGCCGATTGCGGGAAGCAGTTTAAGCGGAAGGATAAACTCAAAGAGCATTGTAAGAGGATGCACTCGGAGGAGCGAGAGAACACCATTCCGAAACAGTCCAAGCCCGTCATCGCTTTGAATAAAAAGTTCACCCCGAAAGTGGAGCCGACCGATTTTCACAGGTTCATTTATAAGTGTCACGCTTGTTTGGTGGGATTCAAGAGAAGAGGGATGCTAGTGAATCACTTGGCCAAACGCCATCCGGACATAAGGCCCGATTCTGTCCCGGAATTAAACCTCCCCATCCTCCAAACGACACGCGACTACTATTGCCAATACTGCGACAAAGTCTACAAGAGCAGCTCTAAAAGAAAAGCCCACATCCTGAAAAACCATCCGGGGGCTGCTCTGCCCATGAGCAACCGTAAACAGGGCTCGCTGCAAGAAGTTTCCGGGCTGCCGAATCCCACCTTCTCCCAAACCGTCGGGAGCATCACCACCAGGCCCCAAAGCTGCAAGTGGTGTCACAAGCAGTACGCCAGCAAGGCGAAGCTGCTCCAGCACCAGAGGAAGAAGCACACCGAGCAGATGGCCAGCGAAGCTTCGCCagataatacagaaaataaTGTTTCGAATAAAAACTCCCAGAGAGCCGACCCGGAGAATTGCGTTGTACAGGAGTATTCAAAGATGGAGGAGGTGGACATTGTGAATGACGAAATTGATGATTACGGAATAGAGGATGATTCGCAGTACTGCCATCTGTCTATTAACGAAAGCAATAGCAGTTTTATCGAGGCGGGCGAACTCGAAAATCCCAACTCGCATCTGTATCGGTTGTTGACGTCAAATAATGGAATGCTGCCACCCCGTTGA
- Protein Sequence
- MDTIVEGPPDDGVQDVNIVDTTNWTDNQGIVNNNSTLLYIAVEYVKDYKMGNSADNVVTQPESFTDFDQHVSPLDPNMSSVARYSPVYNEQSTEFNPVVIHQLVTQDANTSNEQFTDNLNTASLETMPTVLCNSNLREVNNQYLQMVEENGGNMVSRSNTEGLQLGSQNEQEVELLITDEATGISYSVNAQELLVERCLEDEQLLEALAPDPLLESDLLTLDDSTLKSELNDDIDISAAVSTSVEAQVVNSYINSLANNEANKSLNGENDFKMETRRNRQNELDPEEQLLSCVYSITDKPILTRAKATLPESYLYINRVNNENAVFAKKAIPKRSQFGPLEGILTLRTEKVENESSPPIFLLESDGAIYEMDVSDENSSNWMCFVRKANTYEEQNLVITQENNSIYFTTTSNILPKQELKVGYSASYAQYFDLPLLEPQEVHNWPCYECSEKFISSEELQNHLNVHDEEKDENTRPRKKLSRNKRRLMKKCQTEAVECNACCEIFFQYSYNLLKNHVIEKHNYSQGSVEDYFSIVVNYKCETCGIGFKSEILLKIHNLGHDPDSSEEQLYHVCPSCLRKFPTQRQLVMHVAHHALPKIIAQPERVKCPVCYKMFALRERLQRHMLVHGSEESKPLQCKTCNKRFLNNSALACHIKTHFIGKKVFECPICKESFDHVLKLKMHVPKHCHNNTFTCPHCKKIFKKYSIIRKHIRAFHCERKHTCQHCSKMFPTLDKLRMHLLRHSDHREFLCADCGKQFKRKDKLKEHCKRMHSEERENTIPKQSKPVIALNKKFTPKVEPTDFHRFIYKCHACLVGFKRRGMLVNHLAKRHPDIRPDSVPELNLPILQTTRDYYCQYCDKVYKSSSKRKAHILKNHPGAALPMSNRKQGSLQEVSGLPNPTFSQTVGSITTRPQSCKWCHKQYASKAKLLQHQRKKHTEQMASEASPDNTENNVSNKNSQRADPENCVVQEYSKMEEVDIVNDEIDDYGIEDDSQYCHLSINESNSSFIEAGELENPNSHLYRLLTSNNGMLPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00110870;
- 90% Identity
- -
- 80% Identity
- -