Phis029053.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonocherus hispidulus
Gene Symbol
-
Assembly
GCA_963924545.1
Location
OZ004697.1:1335676-1346391[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.16 16 7.8 2.6 1 23 278 300 278 300 0.96
2 18 0.00022 0.022 16.8 0.4 1 23 309 331 309 331 0.98
3 18 0.02 2 10.6 2.3 1 23 340 362 340 362 0.99
4 18 4.4e-05 0.0045 19.0 0.6 1 23 371 393 371 393 0.98
5 18 0.0025 0.26 13.4 1.3 2 23 402 423 401 423 0.96
6 18 0.64 65 5.9 0.8 1 23 432 454 432 454 0.95
7 18 0.013 1.3 11.2 1.7 1 23 463 485 463 485 0.98
8 18 0.013 1.3 11.2 3.2 1 23 507 529 507 529 0.98
9 18 0.25 25 7.2 4.6 1 23 538 560 538 560 0.96
10 18 0.0042 0.43 12.7 1.4 1 23 569 591 569 591 0.98
11 18 0.00022 0.022 16.8 0.8 1 23 600 622 600 622 0.99
12 18 0.0041 0.42 12.8 5.9 1 23 631 653 631 653 0.99
13 18 3 3e+02 3.8 1.9 1 23 662 684 662 684 0.96
14 18 0.0092 0.94 11.7 0.5 2 23 694 715 693 715 0.95
15 18 0.051 5.1 9.3 1.3 1 23 724 746 724 746 0.98
16 18 0.00057 0.057 15.5 2.7 1 23 755 777 755 777 0.98
17 18 6 6.1e+02 2.8 5.5 1 23 786 808 786 808 0.96
18 18 0.0075 0.76 11.9 1.7 1 23 817 839 817 839 0.99

Sequence Information

Coding Sequence
ATGCGATTATTGTGCAGATTTTGTCTACAAACAAGTGATACAAATATTAAGAAGATGGACGAGATTATTGTTGAAATAATGAACATCATTTTGCTGGAATTgAATTTGGATATCGTCGAAGAACCTGCCTTATGTAGTGATTGCGAGGGAGTTTTGCAAAAGTGTTTTGATTTCAAATCCACATGTTTTTACACAGAGGAATTCATCTTTCCTTTTATAAATGCGGAGGATTACTCTGGGGAGAAGTTGGATTTAAGTGAGTTACTCGAGTCATTTGTGACAAAGCAGAATCTAGTAGCACTGGAAATACTGTCTAACCAAAAAATTTGCCGATTTTGTATGGAATTGGTGATGGATGAATCGTTTATTCCACTGTGCAATGTAGATGATATCATGTTACAGAAATGTGTGCCGGAATTGAACTTGGAGATAATAAAGGACCCTGTGATATGCGGGGTCTGTCACGGCTCCCTGAAAACTTTAAATGATTTGATTAATAAGTGTATGGAAAACGAaaaaaacatattgaaatacTGCGATGGTAAAGGAGTAAATAGTAGAGGACGAGTAGCATTAGCCGACGTTCTAAAGTTTCTAAAAGAAGGCAATCGCTGCGACCCAAAAACTCTTACAAAATCTGAACGTCTGAAAGcaagaaataatttgaaaaataagatATCTGGATATCAGGGCAAGAGAAAAAGTCTCCGCTCATCACAGCACTTGACGAAATCAACACACATTGGCCAATTACATTCAGTCCATAAGAAAAGTCATAAACTCGATCATCGCAAGAAATTGACACATGAAGACTCATCGGAAAACAAGGCGTTCAAATGTGACGAATGTCCGTACAAAGCGCATCGGCGTCGCGAACTCAATATGCACAAATTTGTTCATAAAGATCCTTCTGAGAAGCAGATGTTCAAGTGTGACGAATGTCCGTATAAATCAGATCGACGTGGCAACCTTATAGCCCACAAATTGACGCATAAAGATCCTTCTGAGAAGCCCCTGTATCAATGTGACCAATGTCCGTATAAATCAGATCGACGTTGCAACCTTATAGGCCACAAATTGACGCATAAAGATCCTTCTGATAAGCAGCTGTTCAAGTGTGACGAATGTCCGTATAAATCAGATCGGCCTAGTAACCTCAGAGTCCATAAATTGACTCATCAAGACCCTTCTGAGAGACAGTTGAAATGTGATCATTGTGACTATACTGCGAGTGTCAAACAAAGCCTCAAGTTGCACATGTTACTGCATCAAGACCCTTCAAAAATACAATGGTTTAAGTGTCAGTCCTGCCCCTATAAGTCACTTGAACAAGCTAGTTTGAAAAGGCACACATTGATTCACAAGGACTTTTCAGAAGTTGAAACTTTCAAGTGTGGTGATTGTTCTTATAAGACAAAATTTCGTAACACCCTCTCTTGGCACGTACTGACTCACCAAGACCCTTCTGAGAGGAAGAAGTACAAACCGACCCGTAAATATCGTCCTGGCACGCAGCTGTATGAATGTTACCATTGCAAACAAAAATTGCAAACCAAAAATGCCCTGAGCAGACACATGCTGTTGCACAAAGATCCGTCGGAAGTACAGTGGCACAAATGCAATTTGTGTGAATTTAGGACACGGTACAAAACTTACTTGAGCCGGCATTCGTTGGTGCACAAGGAGATGTCGGAAGTTAAATTGTTCAAGTGCGGCCTTTGTCAGTATCAAACGAAGCGTCCTGGCGGCTTTAATAGGCACAAATTGACTCATAGAGACCTTTCCGAGAGACAGAGGTACAAATGTGATAATTGCGACTCTAAGTTGACTACAAGAAGTGGTCTAAAGATACACATGTTGTCGCACAAAGATCCttcagaaatacagtggtaCCAGTGCGACCACTGTGACTATAAGTCGCCGAAAAAGGGTTGTTTGAAAAGGCACACGTTGACCCATAAAGATATTACGGAAGTTGAAACATTCAATTGCGATAAGTGTCCGTATAAATCGAAGTGGCACGGCGACCTCGTAAGCCACAAGAGTACTCATAAAGACCCCTCCGAAATACAATGGCTCCAGTGTGATTTGTGCGACTTTAAGACGGCATTGAAATCATCTTTGAGAAGGCACGTGTTACTACACAAAGATTTTTCGGATGTTAAAACGTTCAGTTGCGATAAATGCCCATATAAAACGAAATGGCCTATATACCTCACTAACCACAAACGGACTCACAAAGACCCCTCTCAGAGGCAGgtatataaatgttataattGCGACCATAAACTGACTAGCAAACCTGCCCTTAAGAGGCATATGATGTTGCATAAAGATCCATCAGAAATAACGTGGCACAAATGTGATGTGTGCGACTTTAAGACACACATCAAATACAGTCTGAAATTGCACTCTTTGAAGCACAAGAATATCACGGAAGTTGAAGTTTTCAAGTGCGCTGATTGTACGTTTCAAACAAAGTTACGTTCCAGCTTAATCAGACACACCCTGACTCATAAGAAACTGCCCGAGAAGCAGAAACAGTAG
Protein Sequence
MRLLCRFCLQTSDTNIKKMDEIIVEIMNIILLELNLDIVEEPALCSDCEGVLQKCFDFKSTCFYTEEFIFPFINAEDYSGEKLDLSELLESFVTKQNLVALEILSNQKICRFCMELVMDESFIPLCNVDDIMLQKCVPELNLEIIKDPVICGVCHGSLKTLNDLINKCMENEKNILKYCDGKGVNSRGRVALADVLKFLKEGNRCDPKTLTKSERLKARNNLKNKISGYQGKRKSLRSSQHLTKSTHIGQLHSVHKKSHKLDHRKKLTHEDSSENKAFKCDECPYKAHRRRELNMHKFVHKDPSEKQMFKCDECPYKSDRRGNLIAHKLTHKDPSEKPLYQCDQCPYKSDRRCNLIGHKLTHKDPSDKQLFKCDECPYKSDRPSNLRVHKLTHQDPSERQLKCDHCDYTASVKQSLKLHMLLHQDPSKIQWFKCQSCPYKSLEQASLKRHTLIHKDFSEVETFKCGDCSYKTKFRNTLSWHVLTHQDPSERKKYKPTRKYRPGTQLYECYHCKQKLQTKNALSRHMLLHKDPSEVQWHKCNLCEFRTRYKTYLSRHSLVHKEMSEVKLFKCGLCQYQTKRPGGFNRHKLTHRDLSERQRYKCDNCDSKLTTRSGLKIHMLSHKDPSEIQWYQCDHCDYKSPKKGCLKRHTLTHKDITEVETFNCDKCPYKSKWHGDLVSHKSTHKDPSEIQWLQCDLCDFKTALKSSLRRHVLLHKDFSDVKTFSCDKCPYKTKWPIYLTNHKRTHKDPSQRQVYKCYNCDHKLTSKPALKRHMMLHKDPSEITWHKCDVCDFKTHIKYSLKLHSLKHKNITEVEVFKCADCTFQTKLRSSLIRHTLTHKKLPEKQKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-