Phis035883.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004697.1:46606881-46618268[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.41 41 6.5 4.3 1 23 451 474 451 474 0.96 2 12 0.012 1.2 11.3 0.3 2 23 502 523 501 523 0.96 3 12 0.00017 0.018 17.1 1.0 1 20 529 548 529 550 0.95 4 12 0.0045 0.46 12.6 1.0 1 23 584 606 584 606 0.98 5 12 0.0091 0.92 11.7 0.4 3 23 620 640 619 640 0.98 6 12 5.9e-06 0.00059 21.7 2.9 1 23 646 669 646 669 0.96 7 12 0.0059 0.6 12.3 1.7 1 23 674 697 674 697 0.97 8 12 1.6e-05 0.0016 20.3 0.2 2 23 704 725 703 725 0.97 9 12 0.0017 0.17 14.0 0.6 2 23 761 783 760 783 0.93 10 12 0.0066 0.67 12.1 1.9 2 23 792 813 791 813 0.97 11 12 0.0082 0.83 11.8 0.2 2 23 822 843 821 843 0.93 12 12 0.0011 0.11 14.6 1.2 2 20 850 868 850 872 0.89
Sequence Information
- Coding Sequence
- ATGGATAAGAATTGTAGGACTTGTTTGAAATTGCTGGACCCCAATTCTAGTGTATTGTTAACAAAAAGATTAAGTTTAGGTAAAACTGTTGAGGAAATAATACTTCTGTTTATTCCGCAAATGatGAAGTCTATTTTGGTTGACGATTTCATATGTTCCGACTGTTTTGACACTGTGGAGATATTTGCAAAGTTTATTGAAAGGTGCATCCAAGTAGAAaagtttttaaaagaaaaatttagaGGGATGTGTGAACAGCAGAGGCAGTTGAATAATTTAAGAGAAAACTCAAAGAGCAAGCCTGATGACAGAGGTAACAAGTTACTTAAAATTGTTTCTATCAAACCTTcactttcaaatatatttgaagTTGAATCACCACCAAAAATACAGTCTAATCAGgaATTGGAAAAATCTTCTGAAAAACCATACAGTTTAGTGAAACCACAAAAAACATATTCCCGTAAAGAAAAGCTATCAGTGAGAAGAAAGGAGCCTTTAGAGGAACCTGATCCATTGGATTGTACGCCAGATTCAATAAGTTCAAATACCACCGAGAGTATTACACAAGTTGTATCAGCTAACGGGCGTCCCAGAATTATAATTCATGTAAAAAAGTCAGCTCCAACTTCGGAAAGGTCTTCGAAAATACCTAAGGGTACTGTTCCGACTACTTTTATCGAACAATCTGTAACAATTAGAAGTCGTGATTCAAGTGTCGAAGATGTTTCTTCAGATTTATCTAATGCAACAGGACATGTAACAAACACATCTAAAGAAGAATTATCAATAGATGATGATCTGATAGattttaaatttaaaaaaatttttataagtgcCTGGAACAAAAGCAACAGAAATGGTGATGGAAATttcgaaataaataaaaattcagcACTTACTACTGTCGACGAGTTAAAGAAAAGGTCTGAACGTAATTCAGATTCACCAGTAGAAAATAATATCTCTGATGAAGACGATGTTCAGCATGAAGATTTAGCCTCTGCTGGATCTAATTTAGAAATACAAGATGAGAATTCGTCAGAAAATCCTGCTGTTGAAGACAATGATTCAGAAAAAAGTAAGGGAAATAATTTGGACGTAAATGCTACAGAAGAAGTACCTTTAAACAAGTATATGGAAGATAAGAGCTTAATAGAAAATTTAGCCGCATCTCCGTATGTCGTTAATGTGAATCTAAATCataatcgactaatatctaTGTCCAAAACCAATGAAGAAGTAGCGGATCTTGTAAAAAGGTTTTCCCATAGCGACATAAAATTAATGAAGGCGGGATTACAGAAAGACTCCGGGTCCAAAAGGATAATTTTTCTTGGCAACGCATTCCATCACTGCCCGGAATGCAAAGTTTTGTTTTCAACCAGTACGTTGGTGAAATATCATTTTAGAAGTATGCATCCAAATATTAAATACCCGATGCAAAGCCCCTACGATGTTGTAGTTAAAGGTTCTCTGCCGTCAGATGATAAACCGGTCAAGGTATGCCCGGTATGTGGAGAATATTTTAGCAGCCACGTACCgtattataaacatttaactgtCCACAAAGATTATTACCCGCATAAATGTGAGGATTGTGGTAAGGAGTTCAAAGAAAAAGTTAGTTATACTCGGCATCGTGCAAACTACAACATTTATAAGAACTGCAACGTCACGAAGTGCTACTTCTGTAAAGATGTggTTCTCAAAGATAATTACGTGGCTCACTCTAATAGTCATAGGACATTTCAATGTGAGATATGTAAAAGAAAGTATGCGTCGATGGATCGTTTAGATAACCATATGTCGTACCATAAAAAACCTGTAGCACCAAAAGAAAAGAGGAAAGAGCTTTGCTCCATTTGCGGTAAACTACTCAGCACTATGTCGAATATGTTGATACACTTGAAGAGTCATTCAGAAAACCGGGACCACGAGTGTGAGAAATGTTCAAAGAGGTTTAAGACAAAAGAAAATCTTACGGCGCATACAAGACTTGTTCATGGCAGTCGCCGGTATGAATGCTCAATATGCCAACAAAGAACCAAAACCAAAACAGCATTGGTATACCACAAAAGATTAAAACATTCAAATGTGTATTCGATCACATGCAACATCTGCGGAGCAGGCTTTATTCGAAGCGACTACTATAGAAGACACATGAATAATCATTTGTATGAGTATCAAAGGAATGGAAAATACAGCGAATACAAAGGTAACGGGCCCACGTGTAGAAAGTACATCATTGGCTACACGAGTAATGAGAATGaTCCATTGCCTTGTAAATATTGTCCCAGGAAATACAGAAATGTGCACGCACTGAGAATCCATATAGGGAGCAGTCATCTGAAGAATACTAGGGCTAGGAGCAAATGCCAGTATTGCAATATGACGTTTTCGTCTGTGGCAAATAAACTTCGACACGAAAAGAGACATGAAAACCCTAAGGAATTTGAATTAACATGCAAAGTATGTTGGAATCGGTTCAGCAATAAGGAAGCATTAGCGGCTCATTCTGTTAAACACAAAGGCTCTCAGAAGAGGAAGTGCGAAGAATGCGGAGAAACATTCCCTAGCAAATATTTGCTATACCATCACAAGGGTGAAAAGCATTTTAATGAAGAACTGGCTAATATACAAAGAAATACTATACTAGATGAGGGACTTAGTGATTATAGAATCAATTGA
- Protein Sequence
- MDKNCRTCLKLLDPNSSVLLTKRLSLGKTVEEIILLFIPQMMKSILVDDFICSDCFDTVEIFAKFIERCIQVEKFLKEKFRGMCEQQRQLNNLRENSKSKPDDRGNKLLKIVSIKPSLSNIFEVESPPKIQSNQELEKSSEKPYSLVKPQKTYSRKEKLSVRRKEPLEEPDPLDCTPDSISSNTTESITQVVSANGRPRIIIHVKKSAPTSERSSKIPKGTVPTTFIEQSVTIRSRDSSVEDVSSDLSNATGHVTNTSKEELSIDDDLIDFKFKKIFISAWNKSNRNGDGNFEINKNSALTTVDELKKRSERNSDSPVENNISDEDDVQHEDLASAGSNLEIQDENSSENPAVEDNDSEKSKGNNLDVNATEEVPLNKYMEDKSLIENLAASPYVVNVNLNHNRLISMSKTNEEVADLVKRFSHSDIKLMKAGLQKDSGSKRIIFLGNAFHHCPECKVLFSTSTLVKYHFRSMHPNIKYPMQSPYDVVVKGSLPSDDKPVKVCPVCGEYFSSHVPYYKHLTVHKDYYPHKCEDCGKEFKEKVSYTRHRANYNIYKNCNVTKCYFCKDVVLKDNYVAHSNSHRTFQCEICKRKYASMDRLDNHMSYHKKPVAPKEKRKELCSICGKLLSTMSNMLIHLKSHSENRDHECEKCSKRFKTKENLTAHTRLVHGSRRYECSICQQRTKTKTALVYHKRLKHSNVYSITCNICGAGFIRSDYYRRHMNNHLYEYQRNGKYSEYKGNGPTCRKYIIGYTSNENDPLPCKYCPRKYRNVHALRIHIGSSHLKNTRARSKCQYCNMTFSSVANKLRHEKRHENPKEFELTCKVCWNRFSNKEALAAHSVKHKGSQKRKCEECGETFPSKYLLYHHKGEKHFNEELANIQRNTILDEGLSDYRIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -