Phis040758.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004699.1:1248420-1250149[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.18 18 7.6 1.1 2 23 183 203 182 203 0.96 2 11 0.25 25 7.2 1.3 2 23 209 231 208 231 0.93 3 11 0.0096 0.97 11.6 0.8 2 23 239 261 238 261 0.92 4 11 0.0011 0.11 14.6 1.1 1 23 285 307 285 307 0.97 5 11 0.061 6.1 9.1 0.1 2 23 311 331 310 331 0.95 6 11 0.00031 0.031 16.3 1.2 2 23 337 359 336 359 0.93 7 11 3.5e-05 0.0035 19.3 0.8 1 23 364 387 364 387 0.97 8 11 0.00015 0.016 17.3 5.8 1 23 393 416 393 416 0.97 9 11 5e-05 0.0051 18.8 4.8 1 23 422 444 422 444 0.95 10 11 1.1e-05 0.0012 20.8 0.6 1 23 450 473 450 473 0.97 11 11 1.8e-05 0.0018 20.2 0.1 1 23 481 503 481 503 0.98
Sequence Information
- Coding Sequence
- ATGGAAAACCTTAAAATGTGTCGGCTATGTTTGGCTCAGCCAGTAGTTTCCTACTCATTATTAGAACTAAATGGCGCCTGCAGTATATTAGAATCTGTAACTTCCATAaagATAGGGAATAAAGATAACCTTCCCAAACGAGCTTGTGTGAAATGTTGGTTGAAATTGAAACTAGCATATCAGATTCAACAGAGTATTATAGAATGTGACAAAAAACTAAAACTGTTTGATGTCGAAGATGAATCGGATTATGTGGGTAGCGGAGTTTCGAGTGAAAACGTCAATACTGTCAGTGAAGATGAAAACATTGCCAGCACCAGTTATAACATCAAACAAGAAAAACTTGAACTTGTACATAAAACTGAACCTGAAGATGAATCGGAATTTATGAATTTAGATGTCGATACGAACGAATATAATGCTATTAAAGTAGAAAATCTCTCAGAAACAGAGGTTCTTGTCTTATGCCCAGCAGAAGTGAATAGTGAAAATTCTACAGTAGTTAAAAATGAACAAATCGATAAACCTCGTGACAAAGCTTCTGTATCATGTCACATTTGTGGAACTCATTTAGAAGAAGACTTGTTAATAGATCACCTGAAAACTCACTATTCTAGTAGGCTACAATGCGATGAGTGCAGTACTTATTGTGAAAATATAACGTCTTACAGAAAACATATCTTGGCAAACCACAAGGACATGCAAAAGTCTTGGACATGTAAGATTTGTGGTGCATGTTTCCAGTATAAACCCTTATATAAAATTCACACTGAACAAGCTCATGTGAATGATGTAGTCCTATCTAGAAGAAGAAGAGCCATTTTCAGTAAATCTATACTACAAGATTATAAGTATGATTGTCCTTACTGTAACAGGAAGTTTAAAACTGAGCAGGCCAGTTTGTCGCATATAAAAACTCACAATAAAAAGGAATGCCCAGTATGCGGAGTAAAGATTACTCCGTCAAATTTCAAAGTTCACGTAGACTCACATACCTCAGCCCCTGTTGTGTGTCATCTTTGTGGGGTCACCTATAAAAATCGAACGTCTTTAAGAAGCCATATATATTATACACATTCAACCCGGAAATATGTCTGTAAATACTGTAATAAAGTATTCAAGAAAGCGTATGATCTTCCCCTTCATATTAAAAAAGAGCACACAGGACAAAGGGATCACACATGCGATATATGTGGCAAGAGTTTTTACGCATTCCACAACCTCAATAAACATAAAAAGACGACACATATGAAATTAAGACCCTTCCTGTGTCAGTATTGCAAGAAATCGTTTTCGTCCAAGCATGCCTTGAGAACACATGAACGTCAGCATACAAATGTCACTCCTTACACATGTGGAATATGTGGAGAAGGCTTTAGACAAAACGTGTCTTTGAGATCTCATAAGAAGTCCAAACATAATATAGTCGAAGTCAAATCATTCCCATGCTCGGTTTGCGGCAAGAAGTTTGGATCCAAATGGGCTGTTTTGAGTCATATGAGAGTTCATTAA
- Protein Sequence
- MENLKMCRLCLAQPVVSYSLLELNGACSILESVTSIKIGNKDNLPKRACVKCWLKLKLAYQIQQSIIECDKKLKLFDVEDESDYVGSGVSSENVNTVSEDENIASTSYNIKQEKLELVHKTEPEDESEFMNLDVDTNEYNAIKVENLSETEVLVLCPAEVNSENSTVVKNEQIDKPRDKASVSCHICGTHLEEDLLIDHLKTHYSSRLQCDECSTYCENITSYRKHILANHKDMQKSWTCKICGACFQYKPLYKIHTEQAHVNDVVLSRRRRAIFSKSILQDYKYDCPYCNRKFKTEQASLSHIKTHNKKECPVCGVKITPSNFKVHVDSHTSAPVVCHLCGVTYKNRTSLRSHIYYTHSTRKYVCKYCNKVFKKAYDLPLHIKKEHTGQRDHTCDICGKSFYAFHNLNKHKKTTHMKLRPFLCQYCKKSFSSKHALRTHERQHTNVTPYTCGICGEGFRQNVSLRSHKKSKHNIVEVKSFPCSVCGKKFGSKWAVLSHMRVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -