Phis029008.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004697.1:917523-928588[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.027 2.7 10.2 4.3 1 23 257 279 257 279 0.98 2 18 2.8e-05 0.0028 19.6 1.9 1 23 288 310 288 310 0.98 3 18 1 1e+02 5.2 6.9 1 23 319 341 319 341 0.98 4 18 0.1 10 8.4 5.1 1 23 346 368 346 368 0.98 5 18 0.004 0.4 12.8 2.5 1 23 377 399 377 399 0.98 6 18 5.5e-05 0.0056 18.7 2.4 1 23 408 430 408 430 0.98 7 18 0.00057 0.058 15.5 0.8 1 23 439 461 439 461 0.98 8 18 0.0084 0.85 11.8 3.4 1 23 470 492 470 492 0.97 9 18 9.6 9.8e+02 2.2 0.1 13 23 513 523 508 523 0.90 10 18 0.11 11 8.3 3.5 1 23 532 554 532 554 0.96 11 18 0.0042 0.42 12.7 1.1 1 23 563 585 563 585 0.98 12 18 0.0021 0.21 13.7 5.2 1 23 594 616 594 616 0.98 13 18 0.0011 0.11 14.6 1.5 2 23 626 647 625 647 0.98 14 18 0.017 1.8 10.8 1.0 1 23 656 678 656 678 0.98 15 18 0.00038 0.039 16.0 1.6 1 23 687 709 687 709 0.98 16 18 0.00059 0.059 15.4 5.4 1 23 718 740 718 740 0.98 17 18 2.8e-05 0.0029 19.6 1.1 1 23 749 771 749 771 0.98 18 18 0.024 2.4 10.4 3.2 1 23 780 802 780 802 0.98
Sequence Information
- Coding Sequence
- ATGGAGAATTTTGAGAAACAATTCTGTAAGCTCTGTTTTAATACCTTAACCGATGAAAATTTTAAGATAATAGAAGGGGTTACAAGAGAGAGTTTCGATATTCTTCTGTTTCAAGGGgtttTTAGTGGTGAAAGTAAACATGTAATATGTGATGTCTGTTTTGTAAAACTACAAGCAGCATCGGAATTTAAGACAACATGTGTCAGCACTGAAAACACGATTATTCCTTATGTTGATTGTGCGACAGTGTTTCCTATAGATTTAAAGGAAATTTATCTAAAGGGAAGAGCAGTGAAACAATTAACCAATGTAGAGGGAGATCAGACTGTATGTCGATTGTGTATGCAGCTAGTGAATGGTGAATTTAGGTCATTACTGGACGTAGGTATTGACTTAATTCAGAATTATATCCCAGAAGTGAATTTTAGTGTCACCAAAGATCCTGTCATTTGTAAACCCTGTTTTGATTCACTCCGCGCTCATGGTCTTTTCATAAAGAGCTGCGTGGACGCAAAAGATACACGAAGGTATTTTGATGCGAATGAAGATGGCAAAAGTCAACTGGAAATCCCATCTCTGGATGTGCCTATTAAAACTGAAGACATTGAGGTGAAATTGGAAGATGGAGAATGGGAGGGGAATGAGTATTTGATAAAAACAGAAGTAATCGAAATAAAATCGGAAAGAAAGGAACAAGATGGgtTCCAGGTGCCACAAAATCTAAACATAAATGAATCCTGTCATGTTAAAGAAAGAGAAAATTGCAAGTACAACTGCAGTTTGTGTAATTATAAATCACAATACGGATATCATTTGAAAAGGCACATGCTGACGCATAAAAATCATTCGGAAATACAATGGTATGAGTGTAATgtatgtgactataagtcaaagcTGAAAAGCCAATTGAAGAGGCATATGTTGAGACATAAGGATCCATCAGAAATTCAATGGTATGAATGTAAGTTCTGTGAGCATAAGTCAAAATGGAAATGCGATTTGAAAAAACACATGTTAACGCACGAAGATCCTTCCCATAAATGTGATTTTTGTGACTATAAATCACACTTCAAGGGCAGTTTGAAGTTGCACATGTTGATACATCAATATCCTTCAGAAATACAGTGGCATCAGTGTGATTTATGTGAATATAAgtcaaagaaaaaattaaatttggcgAATCATATGTTGACACATAAATATCCGTCAGAAGTACGATGGTATGAATGTGATATGTGTAACCATAAGTCAAAGCGAAACGATGATTTGAAAAAGCACATGTTGATACATAAAGATCCTTCTGAAATACAGTGgtatgaatgtgatttatgtgactataagtcaaagGTCAAGAGATATTTGCAGAAGCATATATTAATTCATCAGGATCCTTCAGAAATACAGTGGCAtcaatgtgatttatgtgactataagtcaaagcAGAAAATCCTTTTGAAGAAACATTCGTTGACACATAAACATCCATCAGAAATACAGTGGGATCAACGTGATTTATCTGATTATAAGTCAGAGGGGAAAGCTGATTTGAAAACACACATGTTAATACACCAAGATTTTTCTGAAATACAGTGGTATGCATgtaatttatgtgactataagtcgAAGTTCAATCGTTGTTTGCAGAGACATTCACTTGTACATAAGGATCCCACAGAAATACAGTGGTATGAATGTGgattatgcaactataaatcaaagctaAAAACTGGTTTGAGGAATCACATGTTAAGGCACAAAGATCCTTCCCAAATACAGTACCATCAATGTCATTTATGTGACTACAAATCAAAGTTCAAGGGCAGTTTGAAGAACCACATGTTGATACATAAAAACCCTTCAGAAATACAGTGGAAtcaatgtgatttatgtgaatACAAGTCCAAGCAAAAAATACAGTTAAAGACTCATATGTTGACTCATAAACATCCTTCGGAAATACCCTGGTATGAATGCGATTCgtgtgactataagtcaaagtGGAAGGGTTATTTGAAATCACACATGTTAACACATAAAGATCTttcagaaatacagtggtaCGAATGTGATGTATGCGACTATAAGTCAAAATTCAAGAGATATCTGAAGAAGCATATATTgatacataaggatccttcagaaatACAGTGGCATCAGTGTGATTTATGTGAGTATACATCGAAAGAGAGAAGCCACCTGAAGAAACATATGTTGACACATAAACATCCATCAGAAATTCAGTGGTATGAATGCGATTTATGTGATTATAAGTCGAAGCGAAAAGATGATTTGAAAAAGCACGTGTTGACACATAAAGAGTTTTCGGAAAAACAGTGGCATCAATGTGATTTGTGCGATTATAAGTCGAAGCAGGAAATTCAAATGAAGAAACATACGTTGACACATAAACATCCATCAGACACCGTGTTGTAA
- Protein Sequence
- MENFEKQFCKLCFNTLTDENFKIIEGVTRESFDILLFQGVFSGESKHVICDVCFVKLQAASEFKTTCVSTENTIIPYVDCATVFPIDLKEIYLKGRAVKQLTNVEGDQTVCRLCMQLVNGEFRSLLDVGIDLIQNYIPEVNFSVTKDPVICKPCFDSLRAHGLFIKSCVDAKDTRRYFDANEDGKSQLEIPSLDVPIKTEDIEVKLEDGEWEGNEYLIKTEVIEIKSERKEQDGFQVPQNLNINESCHVKERENCKYNCSLCNYKSQYGYHLKRHMLTHKNHSEIQWYECNVCDYKSKLKSQLKRHMLRHKDPSEIQWYECKFCEHKSKWKCDLKKHMLTHEDPSHKCDFCDYKSHFKGSLKLHMLIHQYPSEIQWHQCDLCEYKSKKKLNLANHMLTHKYPSEVRWYECDMCNHKSKRNDDLKKHMLIHKDPSEIQWYECDLCDYKSKVKRYLQKHILIHQDPSEIQWHQCDLCDYKSKQKILLKKHSLTHKHPSEIQWDQRDLSDYKSEGKADLKTHMLIHQDFSEIQWYACNLCDYKSKFNRCLQRHSLVHKDPTEIQWYECGLCNYKSKLKTGLRNHMLRHKDPSQIQYHQCHLCDYKSKFKGSLKNHMLIHKNPSEIQWNQCDLCEYKSKQKIQLKTHMLTHKHPSEIPWYECDSCDYKSKWKGYLKSHMLTHKDLSEIQWYECDVCDYKSKFKRYLKKHILIHKDPSEIQWHQCDLCEYTSKERSHLKKHMLTHKHPSEIQWYECDLCDYKSKRKDDLKKHVLTHKEFSEKQWHQCDLCDYKSKQEIQMKKHTLTHKHPSDTVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -