Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004697.1:563706-569335[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0039 0.4 12.8 0.3 2 20 253 271 252 273 0.95

2 12 0.048 4.9 9.4 0.5 1 17 277 293 277 294 0.95

3 12 0.00099 0.1 14.7 4.8 1 23 308 330 308 330 0.98

4 12 0.00017 0.017 17.1 3.7 1 23 339 361 339 361 0.98

5 12 9.3e-06 0.00095 21.1 2.4 1 23 370 392 370 392 0.99

6 12 0.0026 0.26 13.4 5.5 1 23 401 423 401 423 0.96

7 12 3e-05 0.0031 19.5 2.9 1 23 432 454 432 454 0.99

8 12 0.00062 0.062 15.4 0.8 1 23 463 485 463 485 0.98

9 12 0.0004 0.04 16.0 4.8 1 23 494 516 494 516 0.98

10 12 0.00032 0.032 16.3 4.1 1 23 525 549 525 549 0.93

11 12 2.5e-05 0.0026 19.7 1.8 2 23 557 578 556 578 0.98

12 12 0.00026 0.026 16.5 2.5 1 23 587 609 587 609 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0039	0.4	12.8	0.3	2	20	253	271	252	273	0.95
2	12	0.048	4.9	9.4	0.5	1	17	277	293	277	294	0.95
3	12	0.00099	0.1	14.7	4.8	1	23	308	330	308	330	0.98
4	12	0.00017	0.017	17.1	3.7	1	23	339	361	339	361	0.98
5	12	9.3e-06	0.00095	21.1	2.4	1	23	370	392	370	392	0.99
6	12	0.0026	0.26	13.4	5.5	1	23	401	423	401	423	0.96
7	12	3e-05	0.0031	19.5	2.9	1	23	432	454	432	454	0.99
8	12	0.00062	0.062	15.4	0.8	1	23	463	485	463	485	0.98
9	12	0.0004	0.04	16.0	4.8	1	23	494	516	494	516	0.98
10	12	0.00032	0.032	16.3	4.1	1	23	525	549	525	549	0.93
11	12	2.5e-05	0.0026	19.7	1.8	2	23	557	578	556	578	0.98
12	12	0.00026	0.026	16.5	2.5	1	23	587	609	587	609	0.98

Sequence Information

Coding Sequence: atgtgTAATGTCTGTTCTGTAAAGCTATATGCAGCATGGGAATTTAAGTTGACATGTATCTATACTGACAACACTATCAATCTGTACGTAGATTGTGCAGAAACATTCCCAGTAGATTTAAAACAGGTTTATCTAAAGGAAAGAGGTTGTAAACAATTAACCAGTATGGAGAAAGATCAGATGGTATGTCGATTATGCATGGAGCTAGTGAATGAACAATTTCGGTCATTGAAGAAAGTGAAgcttaatttaattgaaaattacattCCGGAAGTGAATTTTAGTGTAACTAAGGATCCCGTGGTTTGCAAATCCTGTTTCGATTCTCTTAGCACACATAGTGGATTCATAAAGAGCCGTCTGGATGCGGATGTAAAACAAGAACATTTTCGTGTTGTGGGAGGTGTAAGTAGTCATCCCGAAGAGGCATCCACTGATGTgtgtattaaaactgaattcaaaGAAAGCGAAGGGGAGGAACGTAAGCTGTTGATCAAAACTGAAGAAGTGGAAATAAAATCAGAGGAAAGTGAACAGGTAGATGGatgTCTGTCACCACTAGATATGGAGCTAAATGAAGCTTGCtctgttaaaatagaaagcAGTGATGAGTTGACAATACACAATTTGACACATAAGGATTCTTCAGGAATACAGTGGCGTAAATGTGACTCGTCTGATTATAAGTCAATTTGGAAAAAccatttgaagactcatatgttgaaatataaaaatccggCAGAAATACAGTGGAACAAATGCGATTTATGTGGCTATAAGTCAAAGCAGAACAACAATTTGAAGGAACATCTTGCAGAAAAACAGTGGCATAAATGTGATGTGTGCAACTATAAGTCAATTCGGAAATCAAACTTGAAGGAATCTATGTTAGGTCTTAAAAATCCTTTAGAAATACAGTGGCATCAATGTGGTTTgtgtgactataagtcaaaaaagaaaaactatttgAAGAAACATATGTTGACACATAAACatccatcagaaatacaatggcataaatgtgatttatgcaactttaaatcaaagcagaaaggaaatttgaaaaagcatatgttaatacataaaaatgttgtagaaatacaatggtataaatgcagtttatgtgactataagtcaaagcGAAAAGAGAATTTGAAGCAGCACATACTAACACATAAGGATGCttcagaaatacagtggtatAAATGTGACTTATGCAACTATAAGTCATTTCGGAAATATTGTTTGAAGAAACATATGATAATACACAAAAATGCTTCAGAAATACAATGCTATGAGTGCAGTTTGTGTGACCATAAGTCAAAGCGAAAAAGTGATTTGAAGGagcatatgctgacacataaggagacttcagaaatacagtggtatACATGTTACTCGTGCGACTATAAGTCAATTCAGAAAAACCAGTTGCAGGCTCATATGTTGATACATAACAATTCAtcagaaatacagtggtatGAATGTGATTTCTGTGATCATAAGTCAAAACATAAAGGTGATTTGAGGAAACATATGTTGATGCATACAAATCCTTCAGAAATACGGTGGTATGAATGTGATTTctgtgactataagtcaaaaCATAAAAGTGACTTGAAGCAGCATATGTTGACATATAAACATCTATCAGAAATACAGTGGAacaaatgtgatttatgtggctataaatcaaaacagaaaaagaatttGAAGATACATATGTTGACACATAAACATCCAtcagaaatacagtggtatgaatgtgatttatgtgaccgTAAGTTAAAGCATGTACAGAGTTTGAGGAGGCATATGCTGCGACATAAACATCCTCTGTAA
Protein Sequence: MCNVCSVKLYAAWEFKLTCIYTDNTINLYVDCAETFPVDLKQVYLKERGCKQLTSMEKDQMVCRLCMELVNEQFRSLKKVKLNLIENYIPEVNFSVTKDPVVCKSCFDSLSTHSGFIKSRLDADVKQEHFRVVGGVSSHPEEASTDVCIKTEFKESEGEERKLLIKTEEVEIKSEESEQVDGCLSPLDMELNEACSVKIESSDELTIHNLTHKDSSGIQWRKCDSSDYKSIWKNHLKTHMLKYKNPAEIQWNKCDLCGYKSKQNNNLKEHLAEKQWHKCDVCNYKSIRKSNLKESMLGLKNPLEIQWHQCGLCDYKSKKKNYLKKHMLTHKHPSEIQWHKCDLCNFKSKQKGNLKKHMLIHKNVVEIQWYKCSLCDYKSKRKENLKQHILTHKDASEIQWYKCDLCNYKSFRKYCLKKHMIIHKNASEIQCYECSLCDHKSKRKSDLKEHMLTHKETSEIQWYTCYSCDYKSIQKNQLQAHMLIHNNSSEIQWYECDFCDHKSKHKGDLRKHMLMHTNPSEIRWYECDFCDYKSKHKSDLKQHMLTYKHLSEIQWNKCDLCGYKSKQKKNLKIHMLTHKHPSEIQWYECDLCDRKLKHVQSLRRHMLRHKHPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -