Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004698.1:54773700-54776167[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.018 1.8 10.8 0.2 1 23 54 76 54 76 0.98

2 16 1 1e+02 5.2 2.9 2 23 81 102 80 102 0.96

3 16 0.00052 0.053 15.6 1.7 1 23 115 137 115 137 0.98

4 16 1e-05 0.0011 20.9 0.6 1 23 143 165 143 165 0.97

5 16 2.5e-06 0.00025 22.9 0.6 1 23 171 194 171 194 0.98

6 16 0.19 19 7.5 1.8 3 23 202 223 200 223 0.93

7 16 0.11 11 8.3 0.3 1 23 266 288 266 288 0.98

8 16 0.0006 0.061 15.4 2.3 1 23 305 327 305 327 0.97

9 16 2.5 2.6e+02 4.0 0.7 2 23 333 354 332 354 0.85

10 16 0.0086 0.87 11.8 6.4 1 23 387 410 387 410 0.97

11 16 0.053 5.4 9.3 5.1 1 23 418 441 418 441 0.97

12 16 0.00052 0.053 15.6 0.6 1 23 447 469 447 469 0.98

13 16 0.00016 0.016 17.2 1.0 1 21 486 506 486 507 0.95

14 16 7.9e-06 0.0008 21.3 0.8 1 23 521 543 521 543 0.97

15 16 5.6e-05 0.0056 18.6 2.0 1 23 548 570 548 571 0.96

16 16 0.0047 0.48 12.6 0.2 3 23 579 599 578 599 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.018	1.8	10.8	0.2	1	23	54	76	54	76	0.98
2	16	1	1e+02	5.2	2.9	2	23	81	102	80	102	0.96
3	16	0.00052	0.053	15.6	1.7	1	23	115	137	115	137	0.98
4	16	1e-05	0.0011	20.9	0.6	1	23	143	165	143	165	0.97
5	16	2.5e-06	0.00025	22.9	0.6	1	23	171	194	171	194	0.98
6	16	0.19	19	7.5	1.8	3	23	202	223	200	223	0.93
7	16	0.11	11	8.3	0.3	1	23	266	288	266	288	0.98
8	16	0.0006	0.061	15.4	2.3	1	23	305	327	305	327	0.97
9	16	2.5	2.6e+02	4.0	0.7	2	23	333	354	332	354	0.85
10	16	0.0086	0.87	11.8	6.4	1	23	387	410	387	410	0.97
11	16	0.053	5.4	9.3	5.1	1	23	418	441	418	441	0.97
12	16	0.00052	0.053	15.6	0.6	1	23	447	469	447	469	0.98
13	16	0.00016	0.016	17.2	1.0	1	21	486	506	486	507	0.95
14	16	7.9e-06	0.0008	21.3	0.8	1	23	521	543	521	543	0.97
15	16	5.6e-05	0.0056	18.6	2.0	1	23	548	570	548	571	0.96
16	16	0.0047	0.48	12.6	0.2	3	23	579	599	578	599	0.98

Sequence Information

Coding Sequence: atggaTCAGAATAGTGTTGAAACAAACAAAACCAAAGAAGGAAGCGACATTGAATCTTTACTTGGTGAGACACCTTTCATCAAAGAAGAAAAAGACCTCCCTGATTATGTTAAcgtacatttattttctgagcAAAAAGCTAAACCTGCACAACAAATATATCAGTGCCCGGAATGTTTAgttaaatacagaaaaattgAGTATTTGTCTTTACACATATCTATACACGATCCAGATATGACTTGTCCTCTTTGCTCTCAGATGTTCACATGCAGGAGAAAATGGAGATTACACATAAATAACCACATAAAGCTTAAAATGATTGAGGACAAGAAAGATATGTACAATTGTGCATTTTGTCCAAAATCTTTCAACACTAGAAAAAAAGTTACACTTCACACGAGAGTACACACTAATGAGAGGCCTCACAAGTGCGAAATTTGTGGGGAAGGATTTAAGCAACTAAGTGCTCTGAGGGACCACTACGTTACCCATACTAAAGAAAAACGATATACTTGTGAGATATGTGGTGGTGCTTATACGACCTCCTCTAGCTTAAAGAGACACAAGAGGAAGATACACGACAGAGGCAGAACTATAAATTGCGGACGTTGCACCGCCAAATTCCATAATAAAGCTGATTTCAATACCCACCAAGAGAATATGCATGCAGACATCAAATTTAGAAGAAGTTGCCCTTCATGTATGGAAATGTTCCTCACGAAACTCGCCTATAGGACCCACAGAGAGCTGCATAGAGACCACTTCCCGGTAGGGTACCGATATCTGCGGACTTACCAGTGCAAGCTGTGTGGGGGGAAAGTGACTGGTATGAGGGCGTACATGGATCACAGACGCATGCATTTGTGCTACACTGATACGGAACTGAAAGAAGCTGGCAAGACGAGAGTGTTCCAGTGCAAGTTGTGCCCCGTAGTATACAAAGTTAAGCAGAATCTTTACAAGCATATGGACCACCACATGGAGAAAACCACCACTTGTGATGTTTGTGGGAGTTACTCCACGTATTTCGGTTTGAAGTCTCACAAACGGAGGGTGCATCAGGAATTGTCGTGTCGGGTGTGCCACAAAGTGATCGTCGGCAGGCCGATATTGTATTACCATTATAGGAAGTGTCACGCCGATCTTGCGAAAGAGTATGATTGCAAGCATTGCGGGAAGAAGTTCTTGATGAAAACGATGCTGCGACATCATTACAGAAGTGAGCATCAGACGAGTGCTGTTAAGAACTTCAAGTGCGGGTTTTGTGGGAAGAGATTCCTTACGCAGTTCCATATGCTGACGCATAAGAAGAAATGGCACAGCCTGAGAGTTAAGTACAAGTGTTCCATGTGTGATTTGAGCTTCGAGTCCAAGAAAGATATCGCCGAGCACAAATTAACGCACGAAGGACAGTCACGTACTGCGAAAAGGCGTACAAGGGCATTTAGACATTTCCGGTGCCGGGTATGTAAGAAGATCTTCAGGTCGCCAAGAAATTATAAGCTCCACATGTCTCTTAAGAACTGCGTGAATTTTCTTACTGGGAAACGACCTGTTTACAGGTGCGAATTGTGCGATAAGAATTTTAGAAAAGCCGACAATCTGGCGAGGCATTCTCAGTTACACTCCGATTATGAGTACGAGTGCCCCATCTGTGGGAAAAAGTCCAAGATGGTGGAATCTATGCGAAGACATATGAAGAAGCATCACCCTGATGTGCAAATGTTCTGGTGTGATTCTTGTGAGAAGGGATTTGATAATTTATCCAATTACGAGGTACACTATAGCTCGCATTCGATGAAGATAGAAATCGAAGAGAGCGCCGAGAGTGGTATTGGTGTAAATTGTAGTGTTTTGAAGAAAGAGCCAAAGGAAGAAGTTACAGAGAGTTCGCAGTAA
Protein Sequence: MDQNSVETNKTKEGSDIESLLGETPFIKEEKDLPDYVNVHLFSEQKAKPAQQIYQCPECLVKYRKIEYLSLHISIHDPDMTCPLCSQMFTCRRKWRLHINNHIKLKMIEDKKDMYNCAFCPKSFNTRKKVTLHTRVHTNERPHKCEICGEGFKQLSALRDHYVTHTKEKRYTCEICGGAYTTSSSLKRHKRKIHDRGRTINCGRCTAKFHNKADFNTHQENMHADIKFRRSCPSCMEMFLTKLAYRTHRELHRDHFPVGYRYLRTYQCKLCGGKVTGMRAYMDHRRMHLCYTDTELKEAGKTRVFQCKLCPVVYKVKQNLYKHMDHHMEKTTTCDVCGSYSTYFGLKSHKRRVHQELSCRVCHKVIVGRPILYYHYRKCHADLAKEYDCKHCGKKFLMKTMLRHHYRSEHQTSAVKNFKCGFCGKRFLTQFHMLTHKKKWHSLRVKYKCSMCDLSFESKKDIAEHKLTHEGQSRTAKRRTRAFRHFRCRVCKKIFRSPRNYKLHMSLKNCVNFLTGKRPVYRCELCDKNFRKADNLARHSQLHSDYEYECPICGKKSKMVESMRRHMKKHHPDVQMFWCDSCEKGFDNLSNYEVHYSSHSMKIEIEESAESGIGVNCSVLKKEPKEEVTESSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -