Phis029202.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonocherus hispidulus
Gene Symbol
-
Assembly
GCA_963924545.1
Location
OZ004697.1:2623430-2627617[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0006 0.06 15.4 3.6 1 23 267 289 267 289 0.98
2 13 0.00015 0.015 17.3 0.6 1 23 298 320 298 320 0.98
3 13 6.5e-05 0.0066 18.4 3.5 1 23 329 351 329 351 0.99
4 13 0.01 1 11.6 8.4 1 23 360 382 360 382 0.99
5 13 0.007 0.71 12.0 3.1 1 23 391 413 391 413 0.97
6 13 0.00011 0.011 17.7 4.3 1 23 422 444 422 444 0.99
7 13 7.7e-05 0.0078 18.2 3.4 1 23 453 475 453 475 0.99
8 13 0.76 77 5.6 5.2 1 23 484 506 484 506 0.96
9 13 5.1e-05 0.0051 18.8 4.4 1 23 515 537 515 537 0.99
10 13 0.00035 0.036 16.1 2.2 1 23 546 568 546 568 0.99
11 13 1.8e-05 0.0018 20.2 1.3 1 23 577 599 577 599 0.99
12 13 2.6e-05 0.0027 19.7 6.1 1 23 608 630 608 630 0.99
13 13 0.00044 0.044 15.8 5.2 1 23 639 661 639 661 0.99

Sequence Information

Coding Sequence
atggaaaatatcgCATACAAGTCTTGCAGATTGTGCTTtaaacctataaacaatgtaaAGTTCAAAGTAATTGAAACATTGACAAGAGACATGTTAGATATACTTTTGCTAAAGCTGAATTCAGACAAGGGGATTAAATACTTGATGTGTAATGGTTGTTTTGAGAAAGCGTGTGCAGCGTTGAAGTTTAAATCTATATGTTTAGACACTGAAGATGCTATCTTCCCTTATGTTAATTGTGAAGGCTTCATCGATTTGCGAGAGATATATTTGAAGAGTAAAGGAAATGAacagttaataaatgtattcagTGACCAACAAATTTGTCGGTTATGTATGCTGTTAGTAAGCGGTGAATATATTTCATTTGGTGAAGTGGAAAAATATATGATCCGTATATACATTCCAGAACTGAATTTTAGGGCCACCAAAGATCCTGCGATTTGCAAGTCGTGTTTTGATTGTCTCGCCATCCATAGTGGTTTTATAAAAAGGTGTCTTGATTTGGAGGAAGaacgaaaacatttttgtgaCAGTAGAGGTGGAAGTAGTCGAGTTGGAGGGTCTTCTATTGATTTGCCAATTGAAACCCAAGATATTCACTTGAAATCTGAAGAAAGTGAACTAGAGAGGAATGAGTTCTTGATAAAATCTGAAGAAGTTGAAATAAAGTCAGAAGATGAACAGGACAGATTACAGTCATTACAAGATGTGAAGTTAAATAAATTCCATTGTGATAAGACAAAAACTAATGCTAAGAGCACGTTTTTGATTGACAGTGATTTAGATATTCAATGCTACAACTGTAATTTGTGTGACTTCAAGTCAAAGTACAAAAGTTCTTTGAAGAGACACacactgacacataaggatccttcagagataaaatggtataactGTGATTTATGCGGATACAAATCAAAGCAAAAAAACGATTTGAACACTCATATACTGATACATAAGGATcgttcagagataaaatggtataaatgtgatttatgcggccACAAGTTAAAGCGCAAAAAGAGTTTGAATTTGcacatgttaacacacaaaGATCCTACAGAAATACAGTtctataaatgttatttatgcaaccataaatcaaagcagaaatGTGATTTGAAAAAACACATGTTAACACATAAAGATCCCTGGGAAATCCAGTATCATatatgtgatttatgtgactataagtcaaagtACAAAAGTGTTTTGAAGAGGCACACACTGACACATAAGAATCCTTCAGAGatagaatggtataaatgtgatttatgcggatACAAATCAAAGCATAAAAACTATTTGAacactcatatgctgacacataaggatccttcagagataaaatggtataaatgtgactTATGCGGCCACAAGTTAAAGCGTAAAAGGAGTTTGAACTTGCACATGTTAACACATAAAGATCCCTTGGAAATCCAGTTACATATATGTgctttatgtgactataagtcaaagtACAAATGTGTTTTGAAGAGGCACacactgacacataaggatccttcagagataaaattgtataaatgtgatttatgcaaccataaatcaaagcGGAAAAGTGATTTGAccactcatatgctgacacataagaatccttcagagatagaatggtataaatgtgatttatgcagaTATAAGTCAAAGCAGAAAAGCCCTTTGAccactcatatgctgacacataagaatccttcagagatagaatggtataaatgtgatttatgcggatACAAATCAAAACAGAAAAGCCCTTTGAccactcatatgctgacacataagaatccttcagagatagaatggtataaatgtgatttatgcggatACAAATCAAAACATAAAAGCCATTTGAacactcatatgctgacacataaggatccttcagagataaaatggtataaatgtgactTATGCGGCCACAAGTTAAAGCATAAAAGGAGTTTGAACTTGCACATGTTAACACATAAAAAACTTGGAACTCCAGTACCATAA
Protein Sequence
MENIAYKSCRLCFKPINNVKFKVIETLTRDMLDILLLKLNSDKGIKYLMCNGCFEKACAALKFKSICLDTEDAIFPYVNCEGFIDLREIYLKSKGNEQLINVFSDQQICRLCMLLVSGEYISFGEVEKYMIRIYIPELNFRATKDPAICKSCFDCLAIHSGFIKRCLDLEEERKHFCDSRGGSSRVGGSSIDLPIETQDIHLKSEESELERNEFLIKSEEVEIKSEDEQDRLQSLQDVKLNKFHCDKTKTNAKSTFLIDSDLDIQCYNCNLCDFKSKYKSSLKRHTLTHKDPSEIKWYNCDLCGYKSKQKNDLNTHILIHKDRSEIKWYKCDLCGHKLKRKKSLNLHMLTHKDPTEIQFYKCYLCNHKSKQKCDLKKHMLTHKDPWEIQYHICDLCDYKSKYKSVLKRHTLTHKNPSEIEWYKCDLCGYKSKHKNYLNTHMLTHKDPSEIKWYKCDLCGHKLKRKRSLNLHMLTHKDPLEIQLHICALCDYKSKYKCVLKRHTLTHKDPSEIKLYKCDLCNHKSKRKSDLTTHMLTHKNPSEIEWYKCDLCRYKSKQKSPLTTHMLTHKNPSEIEWYKCDLCGYKSKQKSPLTTHMLTHKNPSEIEWYKCDLCGYKSKHKSHLNTHMLTHKDPSEIKWYKCDLCGHKLKHKRSLNLHMLTHKKLGTPVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-