Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004697.1:45331693-45338236[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.4 1.4e+02 4.8 0.8 2 23 214 234 213 234 0.91

2 12 3.4e-08 3.5e-06 28.8 1.1 1 23 238 260 238 260 0.98

3 12 1.7e-05 0.0017 20.2 0.5 1 23 266 288 266 288 0.98

4 12 0.0052 0.53 12.4 2.0 1 21 291 311 291 312 0.92

5 12 5.9 6e+02 2.8 2.9 3 23 358 376 357 376 0.80

6 12 4.6e-06 0.00046 22.1 2.4 2 23 389 410 388 410 0.97

7 12 0.0099 1 11.6 2.4 1 23 416 438 416 438 0.99

8 12 2.6e-06 0.00026 22.9 0.3 1 23 444 466 444 466 0.98

9 12 1.8e-05 0.0018 20.2 4.1 2 23 472 493 472 493 0.97

10 12 2.6e-06 0.00027 22.8 1.4 1 23 499 521 499 521 0.95

11 12 7e-05 0.0071 18.3 1.8 3 23 529 549 527 549 0.97

12 12 0.0012 0.12 14.5 2.7 1 23 555 577 555 577 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.4	1.4e+02	4.8	0.8	2	23	214	234	213	234	0.91
2	12	3.4e-08	3.5e-06	28.8	1.1	1	23	238	260	238	260	0.98
3	12	1.7e-05	0.0017	20.2	0.5	1	23	266	288	266	288	0.98
4	12	0.0052	0.53	12.4	2.0	1	21	291	311	291	312	0.92
5	12	5.9	6e+02	2.8	2.9	3	23	358	376	357	376	0.80
6	12	4.6e-06	0.00046	22.1	2.4	2	23	389	410	388	410	0.97
7	12	0.0099	1	11.6	2.4	1	23	416	438	416	438	0.99
8	12	2.6e-06	0.00026	22.9	0.3	1	23	444	466	444	466	0.98
9	12	1.8e-05	0.0018	20.2	4.1	2	23	472	493	472	493	0.97
10	12	2.6e-06	0.00027	22.8	1.4	1	23	499	521	499	521	0.95
11	12	7e-05	0.0071	18.3	1.8	3	23	529	549	527	549	0.97
12	12	0.0012	0.12	14.5	2.7	1	23	555	577	555	577	0.98

Sequence Information

Coding Sequence: atgaaTTTGGACgaaataattaaaggagatataaAGCAGTATTGCATAGCatgtttaaataaatgtcaaaatatgCATAATCTAACTAAAAACATGGAAAAAAGAGAGTTACTtacaaatttgtttaatattgaGcTCAACAATTTCAAAGAATATCCGAATTTCTTATGTGGTGCCtgcgataaaaaattaaatgtgacCAATAATTTCTACCAAACTGTAAGAAAAAGTTTGGTGTTTCTCgaggaatataataaaaaaagtcaaGTTTTCCCACTGGATTCGAAggaagaaaatgtaaaaaatgaatTGTATGATGATGGAGATATTGATTTATCAAGTGTCAAAACAGAAGATGGCATAAAAGATGGAAATTCAGAGTGCAGAGGTCATCATAGAGATACTTCAGAAATTAAAACTGTAAATCCGGAAGAAGTAGATCGAGTTATAGAGGAGTTTAAAAATAGATATTCACAAAATAAGACATGCATCATATGTGGATTTATAGCTGCAAATAGAAGATCAATTTCTTCACACATGGCCATTTtccataaaGATATAAAAAACCGCTGGTGTTTGGAATGCAatgatttatttgaaaactATGAAGAGCATAAGGAAAGTCACGATAGTAGGAACCAATGTCCATTTTGTGAGAAAAAGGTTACTGTGCCCCATTATATCGAACATCTGCAAAGTCATTCAGGTACCTTTGAATGCAAAGAGTGCAATAAATCGTTTAAGTCTGCCTCTTGGTTAACAAAACATTTACGGATCCATACTAATGAGAAGCCATATATCTGCCCTAATTGCTCCAAAGGTTTTATTCAACTGAGCTCATTGAGGTACCATTTAAGCACTCATGGTAAATATGCTTGCGATGTGTGCAAGAAACACTTTAGAACTGAAAATGATCTTCGAGGACATGAATGCACACCTAATTCCAAAGTATTTGTAACAAAGGAGATCTGGATAAATTCCGGAGAAGGTGGTGAAAATGAGGTTGAACCTGCGGAGACTATTATAATTAAAGGAGTTGAGGTAGTTGGGTCCGTTGATCTACAAAACTTTTGTAAGGACTGTAATAAACGAGTGAAAAGTCTAAAACAGCACACAAAAAAGTATCATTCCGTAACAAATGAACAGGTAGCAGTCAAAAGAATTAAGTGTGAATATTGCCAAAAAACGTTCAGtaGCTCCTACAAACTAAGGATTCATAATAGAACACATACAGGTGAATTACCATACAAATGCAAGTACTGTGATCGAAGGACCCTGACAAGATCTAGGCTCGTAGATCACGAGCGGACTCACACTAAAGAAAAACCATACATTTGTAACGTTTGCggaaaaGGTTTGTCTCAATCTTCAGCACTCAGAACACACATGAAGCAGCACACTGGCAGACCTGAAGTTTGTAATATTTGCAGTAAGACGTTTTGCCGTAAATCAGAATTAAAACTTCATCTAAGTAAACATATGGGCGAGAAGCCATTTTTGTGTACAGACTGTGGAAGAACCTTCGCCCAAAGGAGTCATTTATCAGAACATATGGTCAGCCATAGCGAAGAAAGACCTTTTGGGTGCACTTATTGCGAGAAACGTTTCAAAACTAACAATCTTCTAAAAGAACACCTAAAACTTCATCAAGGATACAAGCCTTTCCAGTGTCCTACATGTCCGTATGCCTGCTACAAGGCATATCGACTCCAGCAACACATGAAACAACACACTATCGAATCGTACGATAATAATGAATTAGTTGAGAATCTCCTTGAAAGTCCAAGAAGTCATGTCCAAAGTTTTGACACTGAAGTTCAATTGGATGCACCTGTTCCATGTGTACAAAATTCCACTACGTAG
Protein Sequence: MNLDEIIKGDIKQYCIACLNKCQNMHNLTKNMEKRELLTNLFNIELNNFKEYPNFLCGACDKKLNVTNNFYQTVRKSLVFLEEYNKKSQVFPLDSKEENVKNELYDDGDIDLSSVKTEDGIKDGNSECRGHHRDTSEIKTVNPEEVDRVIEEFKNRYSQNKTCIICGFIAANRRSISSHMAIFHKDIKNRWCLECNDLFENYEEHKESHDSRNQCPFCEKKVTVPHYIEHLQSHSGTFECKECNKSFKSASWLTKHLRIHTNEKPYICPNCSKGFIQLSSLRYHLSTHGKYACDVCKKHFRTENDLRGHECTPNSKVFVTKEIWINSGEGGENEVEPAETIIIKGVEVVGSVDLQNFCKDCNKRVKSLKQHTKKYHSVTNEQVAVKRIKCEYCQKTFSSSYKLRIHNRTHTGELPYKCKYCDRRTLTRSRLVDHERTHTKEKPYICNVCGKGLSQSSALRTHMKQHTGRPEVCNICSKTFCRKSELKLHLSKHMGEKPFLCTDCGRTFAQRSHLSEHMVSHSEERPFGCTYCEKRFKTNNLLKEHLKLHQGYKPFQCPTCPYACYKAYRLQQHMKQHTIESYDNNELVENLLESPRSHVQSFDTEVQLDAPVPCVQNSTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -