Phis007592.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004692.1:115844369-115853010[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.63 64 5.9 0.1 1 23 61 83 61 83 0.94 2 18 1.1 1.1e+02 5.2 5.0 1 20 89 108 89 111 0.93 3 18 1.3 1.3e+02 5.0 1.3 1 23 118 140 118 140 0.88 4 18 0.01 1 11.5 4.5 1 23 146 169 146 169 0.97 5 18 0.00028 0.028 16.4 2.7 1 23 179 202 179 202 0.97 6 18 0.0035 0.36 13.0 0.7 3 23 212 232 211 232 0.98 7 18 0.0011 0.11 14.6 1.0 1 23 238 260 238 260 0.97 8 18 3.3e-06 0.00033 22.5 0.6 1 23 266 288 266 288 0.98 9 18 0.52 52 6.2 0.4 1 14 294 307 294 310 0.89 10 18 3.9 3.9e+02 3.4 0.7 2 23 416 437 415 437 0.91 11 18 0.11 11 8.3 2.4 1 23 443 465 443 465 0.98 12 18 0.0018 0.18 13.9 1.4 1 23 471 493 471 493 0.91 13 18 0.00013 0.013 17.5 3.6 1 23 499 522 499 522 0.98 14 18 0.00059 0.059 15.4 3.3 1 23 534 557 534 557 0.93 15 18 0.0058 0.58 12.3 1.3 3 23 568 588 567 588 0.98 16 18 9.7e-07 9.8e-05 24.2 1.1 1 23 594 616 594 616 0.98 17 18 8.3e-07 8.4e-05 24.4 0.8 1 23 622 644 622 644 0.98 18 18 0.0031 0.32 13.1 0.0 1 22 650 671 650 671 0.96
Sequence Information
- Coding Sequence
- ATGTACTTTCACAGGTGTCTCTGTAAATTGTGTGTGTCCTGTCTTTTTAGTGGATCTCAGTCCAGGAAACGTCGTCGAAAACAATCCATAAAGGCTGATCCCGACTACGTCGGTCCCAAGATCAAAAGGTCACCAAGTGAAGACTTCTCTGAAGATACTCTGGAGAACAACTTCCTCAAATTCGCCTGCGAAATCTGCGATGAAAAGATAGAGTCGAGCGTTACCTTCGCCTTACATTCCATCAAGCATTCCGCGATAAACAAATACCATTGTCATTACTGCAAATACAAAACTAGTACCATCAACCGCATGAGGAGACACATGTGGGTGCACGGCAACGGTGGAAAATATTTCCAGTGCGAGACTTGTTCCACTGTCTTCCCTGAGTGTATCCAAGCCATCGAGCACAAGAACTTCCACTCGGGGGAGATGCCCTACAAGTGTGAGACATGCGAAAAACATTTCATGTTCTCCTGGTTGCTCTTCACGCATCGTCGCCTGTTTCACTGGGACTCCAAGGGTGACACGGGTCCCTTTACCTGCGACACTTGCCATGGGACGTTTGGGACGCGCTCAGGTTTAAGAAAACACATCATGCGGAAGCACAACAGCAACCCCAAGGAACCCACACTCTGCGATATCTGCGGGAAGAGTCTGGCCAATAACGAGACGTTGAAGTTCCACAAGAGGACCCACACGGGATACAAACCGCACGTGTGCAGCACTTGTGGGAAGAGTTTCCTCAAAAAGGGGTTGCTGATGGAGCATGAAAGAGTGCACACGGGCGAGAGGCCCTTTATATGTCAGTACTGCAAGAAGGGGTTTTCTCAGAGGGCGCCGCTGAAGATTCACATGCGGATCCATACGGGGGAGAGGCCGTACGTGTGTAAATTTTGTGGGAAGGGGTATTTCGACCCCTCCATCCTAAACAATCTCATATACGGTCCAGGAATCTCCATAACTCCTGTGAAACAGGAAATCTACGACTACACTGCCAACAGCCCCAATAAGTTCAATCCTTTCAATGGCTTTAACGGTTACAACCCGTTCATGAGTCAACTCATCGAATCCGAGATGAAGCTGAACGCCAAATTTCCTCTTCCAAGTGCGGAGATGGCCGTAACGAAACCTGCGGCCGCTAGCAACATCCTAGACTGCTTGAACAAGGCTAATAAGCAAAAAAGGAAACCAAAGACTACTGCGGATAGGAGCACCCCTCAACCTCCCACTTTAGATGAACCCATACACTGCGAAACTTGCAACGACACGTATAAGAATAACGTGGCGTTTGCTTTGCACTCAATTCAACACACCCAGGATGACAAATACGAGTGTCACCTGTGCGACTACAGAAATGCTTCCAAGTACCACATCGAGATGCATATCAGGGCCCACGAGGGCACCACCAAATACAAATGCGAGGTCTGCGGCAAAGCTTTCACGGTAAGCACTCACGCCATAGAGCACAAGTACTTCCATACCGGGGAGAAACCCTTCCAGTGTGAAATATGCGGAAAGCATTTCATGTTCTCCTGGTTCCTAACCTCTCACCGCAGGACGCAGCATTGGGAGATAATGACGGGCAGTCCGCTGGTGAAATACGACTGTACTATTTGCAACAAGCACTACACTTCCTCCACTGGACTGAAGAGGCACAACCTCAGCAAGCACAATTCTTCCGGTATAGATCCGTCAGTGCTGTGTGACATCTGTGGGAAGAGACTGTCGAGTAAGGAGAAATTGAAGTTCCACCGGAGAATACACACCGGCTACAAGCCCTTCTCCTGCGAGGTGTGTTCCAAAAGTTTCTCCAGGAAGGAACAGCTAAAGGAGCACGAGAGAGTGCACACGGGCGAGAAGCCCTTCATCTGCAAGTACTGCGGCAAGGGATTCACCCAGAGATCTCCCCTTAGGATACACGAAAGAACGCACACTGGGGAGCGGCCCTACGTGTGTATGATCTGCGGAAAAGGGTTTATATCTAAGGGGGTGATGGATACGCATATGAAGACTTGTTCGGCGGCCCAGATACCTTATAATTAG
- Protein Sequence
- MYFHRCLCKLCVSCLFSGSQSRKRRRKQSIKADPDYVGPKIKRSPSEDFSEDTLENNFLKFACEICDEKIESSVTFALHSIKHSAINKYHCHYCKYKTSTINRMRRHMWVHGNGGKYFQCETCSTVFPECIQAIEHKNFHSGEMPYKCETCEKHFMFSWLLFTHRRLFHWDSKGDTGPFTCDTCHGTFGTRSGLRKHIMRKHNSNPKEPTLCDICGKSLANNETLKFHKRTHTGYKPHVCSTCGKSFLKKGLLMEHERVHTGERPFICQYCKKGFSQRAPLKIHMRIHTGERPYVCKFCGKGYFDPSILNNLIYGPGISITPVKQEIYDYTANSPNKFNPFNGFNGYNPFMSQLIESEMKLNAKFPLPSAEMAVTKPAAASNILDCLNKANKQKRKPKTTADRSTPQPPTLDEPIHCETCNDTYKNNVAFALHSIQHTQDDKYECHLCDYRNASKYHIEMHIRAHEGTTKYKCEVCGKAFTVSTHAIEHKYFHTGEKPFQCEICGKHFMFSWFLTSHRRTQHWEIMTGSPLVKYDCTICNKHYTSSTGLKRHNLSKHNSSGIDPSVLCDICGKRLSSKEKLKFHRRIHTGYKPFSCEVCSKSFSRKEQLKEHERVHTGEKPFICKYCGKGFTQRSPLRIHERTHTGERPYVCMICGKGFISKGVMDTHMKTCSAAQIPYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -