Phis014769.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004694.1:18323336-18335877[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.01 1 11.5 2.3 2 23 345 366 344 366 0.96 2 13 3.7e-05 0.0037 19.2 3.1 1 23 371 393 371 393 0.99 3 13 4.2e-05 0.0043 19.0 0.4 1 20 399 418 399 418 0.97 4 13 1.2e-05 0.0012 20.7 0.5 1 23 654 676 654 676 0.98 5 13 0.01 1 11.6 2.1 5 23 686 704 685 704 0.95 6 13 0.0077 0.78 11.9 0.2 1 23 710 733 710 733 0.92 7 13 0.00089 0.09 14.9 0.3 1 23 745 767 745 767 0.94 8 13 0.00016 0.017 17.2 6.9 1 23 773 795 773 795 0.98 9 13 2.7e-07 2.7e-05 26.0 0.7 1 23 802 824 802 824 0.98 10 13 8.3e-05 0.0084 18.1 3.1 1 23 830 852 830 852 0.98 11 13 1.4e-06 0.00014 23.7 1.7 3 23 860 880 858 880 0.96 12 13 0.00013 0.013 17.5 0.2 1 23 886 908 886 908 0.98 13 13 0.35 35 6.7 1.6 1 23 913 936 913 936 0.97
Sequence Information
- Coding Sequence
- ATGAGTCATTATTGTTGTGTGCCTTATTGTTCCTCTTGGataaagaaaaaccccgaaCTTAGTTTTCATTCTTTTCCAAAAGCTGGAAAATCGAGAGTTTTCGTGGAAACTGAGCTAGGCATTAAACAGTTAGTAGACAGGAGAAAAGTATGGATAAAGACGTTAAAGATTGAAAAGAAAGACCTAGAGTATatgagagtgtgctctttacatTTCTCTGAGAATGATTacttccataaagATAGAATATCGCGTAAAAGATTGAAATCTATTGCTGTCCCTACAAAAAAGCTACCTCTTAAATCTGATTCAGAACCAGGGCCATCATCTAGAGATGTCAGAATAGCAACTAGacgtaaaaaatgtaaaacggTTGTTTCTGACTTCTCTCAAGGGGTTGCCCATAGCCAATGCGAAATCATAGTGGACCAGGAGGACCAGGAGGACATTGAAGCTGCTGGAGCTCTTTTAGTACTCATGGAATCTCAGTCTCAGCCTGCTAAATTTGATGGACCTGGCACTTATAGAGATGCAGAAGTACAAGTAAAGACCCCGAAGGCGAGCAAAATGGAATTGGAATTGGAGACACATCCTAATCTCATTTGTCGGACGTGCAAATGTGTCGCCCCACGAATGTGGCCCCTTTTCGAGGGGTATGAAAATCCACATCAAAGTCCCCGTATTGACGAGATGCTAATGGCCTGTGCTTCAGTTCAGGTCATGTGTGGCGATGGGCTGCCAGCCCAAATTTGCCAAGTTTGTGTAGAACAACTAAGGAATGCTTTTATTTTCAAGCGACAATGCGAAAAAATAGATGCTAGTTTAAGAGAGTACGCAAAAGATATTAAAGTTAGTGAAATAAAGGAGGAACTTCAAAATTCTGATTTTATGGaGTCTTTGAATACCTTAAGCAGCCTGATAAATGAACAGACCTCTGTTAAAGAAACTAACGCAGAAACTTTTATAGCTGCTGTTGTTCCAAAAATCGAAACTGATTACATCCAGTTGATGGACAACGATCAGTTGCTGTTAACGTGTTGTGAATGTACTAAAATATTCACCACAATCAAAGGTCTACGGTCCCATAAACTTGTCCATTCACGCAGCATGTACAAATGCAGCCAGTGCGATAAAGAATACACCAAGATGGGGCACCTTAAGCGGCATCTTGCAACTCACTTGAGGAATAAGCCGTTTTCCTGTAACACCTGCAACAAGGTGTTTAGCAGGGTTGAAAATTTGAACAATCATATACCTAAATGCAAAAgaGACATTGTCTATACATACGAGGATAGCCTTGAAGTTTACAAAAAGATGCACGACACCGAAACTAAACTATCCACCGTTGAAAATCTGGATAACATAGAAGACTATTACTACCAAATCGATCAAGATGACGACAGTGTATTTTCCAAGCATTCAGATGTGAATGACTGCTTTCAGAACCAAGTGGAAGTGATGGGGGATATGGACGATAATGGGGCACACATAGGCTTAAACGATGATGACAGCAGTGTTAGCAAAACTGTTATGGATAACGATAGCGTCAATGATATTGGTGTAGCAGTAGATAAACCTGCGGATGGTTTGGAAAATGTAAAAGAGGAAGACCTTACAGAAATGAAGGTGGAATATACCTTGGAAACAGAAGATAATATTCTAGACCTTCCTGCTATTGATTTTGGAAATAGTAAACCTGAAGATTCCAATGATTCAGATTATCTTCAACAAAGGAGCGTCTCGCCAAAAATAAAACGTAATCATGGTAAGCCATGCAAAAACCCACTAGCTTCAGAAAAAATGAAGACTCCAAGCAGGGATCTTCGTATAAAACGCATTAAAACAGAGCCGATGGATGAGGAACATGGTGAATACTCTTGCCCCTCTAGTCAAGAGATGTTCAATAGTACGAGTGCTGTTGATAAACATGCTGAAACTAAACATGAAGGTCTAAAAGTTTACAAATGTGACGTGTGTAATAAGGAGTTCAGCCGGATTGACCAGCTTAGGGAACATGTTTCTAGTCACTTGGATTACAAACTATTGCCTTCTAACATGTGTACGGAAAACTTTAATCGAAGGGATCACTTGAATCAACATCAAAAGTTGCATGAGAGCAGCGATGATTTTGAATGTGATATTTGCCAGAAAGCATTCAATTGGGCTGTGGATCTGAAAAAACATAAAGCATTGAAACATGGCATTGGAGAAAAGATTATGAACGAGAAGAGGTTCGAATGTCCACTGTGTGACAAAAGTTTCATAACCAAGAAATCCAGAGATATTCACGTCAACGGGCATAATGGTCAGAAGGAGTATACCTGCAACATATGCCACAAGACATTCCTTTCGAAGTATCACCTCACAAAACACATCAAACTACACAATGAAGATTCCAAGAAGTTTGTTTGCTCCGAATGTGGCCAGAGATTTACTAGGAACGATTATTTGGTTATCCACATGCGGAGGCACAGTGGAGAGAAaccatttaaatgtaaattctGTGGAAAAGgttTTCCAAGAACAACAGATTTGAAAGTTCATGAAAGACACCACACAGGGGAAAAAACTCACTTGTGCACAATCTGCGGAAGAGGATTTGGAAGgTCATACAATTTAACACTACACATGAGGACACATACTGGGGAAAAACCATATCAGTGCACGTATTGCGATGCTGCTTTTGCACAGGGAAATGACCTTAAGACACACGTTCGGCAACACACGGGAGAGAGGTTTGAGTGCGAGCTGTGTAGTGACAAGTTCGTCAGGGTTAACCGCCTCACCCACCATAAACGGATTGTTCACGGTTTGAATCCCTCCACAAGCCCAGCGAGCCCCGTCCCATAA
- Protein Sequence
- MSHYCCVPYCSSWIKKNPELSFHSFPKAGKSRVFVETELGIKQLVDRRKVWIKTLKIEKKDLEYMRVCSLHFSENDYFHKDRISRKRLKSIAVPTKKLPLKSDSEPGPSSRDVRIATRRKKCKTVVSDFSQGVAHSQCEIIVDQEDQEDIEAAGALLVLMESQSQPAKFDGPGTYRDAEVQVKTPKASKMELELETHPNLICRTCKCVAPRMWPLFEGYENPHQSPRIDEMLMACASVQVMCGDGLPAQICQVCVEQLRNAFIFKRQCEKIDASLREYAKDIKVSEIKEELQNSDFMESLNTLSSLINEQTSVKETNAETFIAAVVPKIETDYIQLMDNDQLLLTCCECTKIFTTIKGLRSHKLVHSRSMYKCSQCDKEYTKMGHLKRHLATHLRNKPFSCNTCNKVFSRVENLNNHIPKCKRDIVYTYEDSLEVYKKMHDTETKLSTVENLDNIEDYYYQIDQDDDSVFSKHSDVNDCFQNQVEVMGDMDDNGAHIGLNDDDSSVSKTVMDNDSVNDIGVAVDKPADGLENVKEEDLTEMKVEYTLETEDNILDLPAIDFGNSKPEDSNDSDYLQQRSVSPKIKRNHGKPCKNPLASEKMKTPSRDLRIKRIKTEPMDEEHGEYSCPSSQEMFNSTSAVDKHAETKHEGLKVYKCDVCNKEFSRIDQLREHVSSHLDYKLLPSNMCTENFNRRDHLNQHQKLHESSDDFECDICQKAFNWAVDLKKHKALKHGIGEKIMNEKRFECPLCDKSFITKKSRDIHVNGHNGQKEYTCNICHKTFLSKYHLTKHIKLHNEDSKKFVCSECGQRFTRNDYLVIHMRRHSGEKPFKCKFCGKGFPRTTDLKVHERHHTGEKTHLCTICGRGFGRSYNLTLHMRTHTGEKPYQCTYCDAAFAQGNDLKTHVRQHTGERFECELCSDKFVRVNRLTHHKRIVHGLNPSTSPASPVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01227129;
- 90% Identity
- iTF_01227129;
- 80% Identity
- iTF_01227129;