Phis024062.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004695.1:62589337-62591049[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.1 8.2e+02 2.4 0.2 2 8 138 144 137 148 0.90 2 13 0.00018 0.018 17.0 1.0 1 23 165 187 165 187 0.99 3 13 1.1e-06 0.00011 24.0 0.3 2 23 194 215 193 215 0.97 4 13 0.013 1.3 11.2 0.9 1 23 221 243 221 243 0.96 5 13 0.84 85 5.5 1.4 1 23 249 272 249 272 0.84 6 13 1.8e-05 0.0018 20.2 0.2 2 23 296 317 295 317 0.96 7 13 9.1e-07 9.2e-05 24.3 0.7 1 23 323 345 323 345 0.96 8 13 2.7e-08 2.8e-06 29.1 0.9 1 23 351 373 351 373 0.98 9 13 7.7e-05 0.0078 18.2 3.5 2 23 384 405 383 405 0.96 10 13 0.00013 0.014 17.4 0.5 2 23 412 433 411 433 0.96 11 13 1.8e-05 0.0018 20.2 3.5 1 23 439 461 439 461 0.98 12 13 1.5e-06 0.00015 23.6 0.4 1 23 467 489 467 489 0.99 13 13 8.1e-05 0.0082 18.1 3.6 1 23 495 517 495 518 0.96
Sequence Information
- Coding Sequence
- ATGACTGAATCTAATCTTTCTTCCCAGGATTTTCCAAATATATGCCGGATTTGTTTACAGAATGGTGATGATCTTCTagattttattgaattaaacattatacatttatataaattacttaCAAATATTGAAGTAAAAAGAGAAGATGAATTTCCTAAAAGAGTATGCAAGATTTGTAAAAACAACCTAGataatattaatacatttattgataaatgtaaaaataatgatgcTCGTCTCAAACAAATTTCCCTACAGGACAATGTAAAAAATCAAGTCGAAGACTCCGACAATagcaattttgaacaaaatgaAGTTCAAATTAAAGTAGGAGAAGGTAACAATTCAAAGCCTAAACCTTTAAAAAGTAGGGTCAATGGAGGAATAACAACTAGAGTAACGAAGTCGAAGAAATGTTCTATTTGTGGTAAATTGATAAGTCAAGATGCAGAGGAACATTATAGAAAGAATCCAAAATGTAGACCAAATGATTTTCAGTGTCCAgtgtgtgaaaaattattttacccAAAAAGGAAACTTTTGACACATTTAAGATCacataaaaaatgttcagtCATTAAATGCCCTGAGTGTTCTAAAGAATTTACTTCTGCTGAAAACTTGAGAAAGCATGCACTTACCCATGGAGGCGTGAAACCATTTATTTGCAAGATTTGCGAAAAAGGTTTCTTAAGGAAAAGATCATTGGACGAGCATTTGAACTTTCATACTGGAAAAACTCCATATATATGTGCCTACTGCGGAAATGGTTTCAAGCGGTTTGCAGACCATGCCGCCCACATCTACCACAATCATAAcggaaatatagaaaatgttccAAAACATAAAAGAAAGTATACAGAAAAACGGGTACACCTAAAACTGGAGTGTAAGAACTGTGGAAAAATGTTTGCTAGTCGATCTGGTTATGCCAATCACCAGCTTATTCATAAAGGGGTAAAAAAATTCTTGTGTGACATATGTGGAAGAAAATTCAGAACAAATCCAACATTGCAGATGCACATTAGAACTCATACTGGTGAAAAACCGTTTGAATGTAAGGACTGCGGAAAGGTCTTCGGCCAAAAAACCCACTTAATTGTGCACATGCGAGTTCACATGCTTGAAGCCACAACTGATCATTCTTTAAATTGTCCACATTGTGACAAAAAGTACTACACCAAACATGGTTTAAACAGTCATATATTATCACACATTAAGGATAAACCCCAGGAATGTCCGTTTTGCGGTAAGCAGTTTCATCAAGCAAGTGCATTAGACAATCACATTTTACAGCACAAAAGTGGAAAACTTCACAGATGCAATGTGTGCAGTAAGTTGTTTATGTCGCCTTCCCATTTAAATGCTCATTTGAGAACGCACAGTGGGGAGAAACCTTACAGATGTTCTGTTTGCGGGAAACAGTTTGCGGAGCCTCAAACATTAAAGGTGCACATGAGACAGCATACTGGTGAGACACCTTACGTGTGTTTGGTTTGTGAGAAAGGGTTTCACGATGCTAGTAATCTCAAGAGGCACTTCAACAGGCATCATGGCAGTGCAAATagagtgaaaaatataaataaacaaacagtgaaataa
- Protein Sequence
- MTESNLSSQDFPNICRICLQNGDDLLDFIELNIIHLYKLLTNIEVKREDEFPKRVCKICKNNLDNINTFIDKCKNNDARLKQISLQDNVKNQVEDSDNSNFEQNEVQIKVGEGNNSKPKPLKSRVNGGITTRVTKSKKCSICGKLISQDAEEHYRKNPKCRPNDFQCPVCEKLFYPKRKLLTHLRSHKKCSVIKCPECSKEFTSAENLRKHALTHGGVKPFICKICEKGFLRKRSLDEHLNFHTGKTPYICAYCGNGFKRFADHAAHIYHNHNGNIENVPKHKRKYTEKRVHLKLECKNCGKMFASRSGYANHQLIHKGVKKFLCDICGRKFRTNPTLQMHIRTHTGEKPFECKDCGKVFGQKTHLIVHMRVHMLEATTDHSLNCPHCDKKYYTKHGLNSHILSHIKDKPQECPFCGKQFHQASALDNHILQHKSGKLHRCNVCSKLFMSPSHLNAHLRTHSGEKPYRCSVCGKQFAEPQTLKVHMRQHTGETPYVCLVCEKGFHDASNLKRHFNRHHGSANRVKNINKQTVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -