Phis000105.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonocherus hispidulus
Gene Symbol
Snai1
Assembly
GCA_963924545.1
Location
OZ004692.1:879577-886496[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00033 0.033 16.2 0.1 1 23 328 350 328 350 0.95
2 12 1.7e-05 0.0018 20.2 1.5 1 23 358 380 358 380 0.99
3 12 0.00016 0.016 17.2 0.3 2 23 388 409 387 409 0.97
4 12 2.5e-05 0.0026 19.7 0.6 1 23 415 437 415 437 0.98
5 12 0.00016 0.016 17.2 1.4 1 23 444 466 444 466 0.99
6 12 0.00011 0.011 17.8 1.4 1 23 472 494 472 494 0.96
7 12 2.7e-05 0.0027 19.7 0.1 1 23 500 522 500 522 0.98
8 12 1.6e-06 0.00016 23.5 1.2 1 23 528 551 528 551 0.96
9 12 2.9e-05 0.0029 19.5 0.5 1 23 557 580 557 580 0.95
10 12 3.9e-05 0.004 19.1 2.1 1 23 586 608 586 608 0.99
11 12 0.00024 0.025 16.6 0.4 1 23 614 636 614 636 0.94
12 12 0.0065 0.65 12.2 0.1 1 21 642 662 642 666 0.92

Sequence Information

Coding Sequence
ATGTCAACGGGTAACAGCGTCTTCTGTTTGGTATGCAATGGTAGCTGTCTTTCCTCTAGGAACAGTGTCCAGATTTTCAATAAAGAGGGTAACACTGGACGTGAACATATTGCCTCTTTGCTTTCtgatatattaaataaggaaatAAAGGAAGATCCAGATCAAACGCAAGTCCTTTGTAAGAAGTGCTATAAATTAGTCGATGAATTAGATGAGTTACAAGCTCGGGTCATTGAAATAAGAAATGAAATCATTGACAATCACAAAGGCTCTGTTAAGAAAAAGGAAGTTGAAGATGAGTCGGAGATGCAAGACACCAAGGAGGTAACGGAGAGTAAATCGATTGAAGCAAATAAAGAAAACGAAGTGCCTAAGAAAATCTTGGATATACCTTCTTCAGATGAAGACTCAGGCCAgattttggcagaaaaaaattCTTTACAGTCCATACAGGACATAGAAATGGAGCTGGTTAAGATTCATGGAGAGATTGAAGAGGAAGAAGTAGAACAAGAGAAAGAAGAAAACGGTATGGACATTGATGATCAAAATTTCCATACCTTTTCCAATGATGGGGGAGAAATTGTAGATTCTGGAGCTATAGAACATTCTTCCGATTCTGATTATGAACCCCCTTCTTCTGTTACAGTTGCCACTGAAAATTTAGTGGAGGCCACAGCAGTTGAAAAAAGTAGTACTGataatgtGAAGGTAAAAGTTGAACCCGGAACAGAGGAACCTACTTCTGGGCACCTGGGTATGGAAAAACCCAACATACTTAAAAAAAAGACCCCGACTATCGCCAACAACGTCATCATCCAAAAGCAAGAAGACAAAAAGTCAGAGGAGTTATTCACAATGCCTATAGTGACCCGTGATGGCAACCTCTACACTTGCCTGCTTTGTCAAGGCGACGAGACCGTGGCGGGAGAGGCCAAGGCCATCGCAATACACATGAAACAGGCCCATGGTGCTCGCATATACATTTGCGACGTGTGCGGTGAGGATTTCAGGAAGCGCAACCAACTGAGCGCTCATCTAGACGAACACGTCGCTGCAGAAGACGGAGACTTCCAGTGCGAAATATGCAACCGCATATTCAGCAACCTGCGGCTGTTCCGCATCCACAGACGCATGCACTACCCCCAGGCTAAGGCGTGGGAGTGCGAGACTTGCGGCAAGAAGTACAGCAGCAAGAATTTGCTGGACGAACACGTCAATACTCATCTGGGTGTAAGGCCGTACATTTGTGGTCTGTGTGGCAAGGATTTCGCCAGCAAGTACACATTCAAGGCGCATGAGAAGACGCACGAGGTGCGCCCCAGGCCGTTCCGCTGCGTGCAGTGCCCCAAGTCGTTCCTGAGCCAGCAGAACTTGACACAGCATGAGCGCACCCACTCGGGAATGAAGGAATTCAGCTGCCACCTGTGCGGCAAGCAGTTCGGCTCTGCCCACAACTTGGAGGTGCACTCCATCGTGCACACTGGTTACAAGCCGTTCGTCTGCGGGCTGTGCGGTAAGGCTTTCGCTAGGAAGGCCGAGATCAGGGACCACGAGCGCACCCACACCGGAGAGAGGCCCTATCAGTGTGAATTCTGTGGCGCCACGTTCAGCCAAAGGTCCAACCTGCAGTCGCACAAGCGAGCCACCCATTACGACGACAAGCGTTACCAGTGCTCCGACTGTGGCAAGGGCTTCAAGCGGCGGCGTCTGCTGGACTATCACGTGAAAGCGGCGCACACAGGCGAGAGGCCGTTCAAGTGCGACGTGTGCGAGGCCACCTTCGTGTACCCGGAGCACTTCAAGAAGCACCGCAGGATACACACGGGGGAGAAACCGTTCCTGTGCGAGGTATGCGGGAAGGCATTCAACAGCAGGGACAACCGCAACGCCCACAGATTCGTGCACTCGGACAAAAAGCCGTACGAGTGCCTGGTGTGCGGAGCCGGCTTCATGCGCAAGCCCCTCCTCTACCAACACATGCAGGCGCAGGGCCACCTTAACGACACCATCGTGGTGAATCAGCCTCGCCTCACCACCGATGACGACCAGCTGGTCACGGTGAACTCTGCCGGGGAAATGGAGATCGTGGACGCGGCCACGGCAGCCGCAGCCGATTCGAAACTCTACATTCAGGACCAGGACGGCACGGAGCACATCATCATAGACGGCCAGCAGATCAGTTTCGCAGAAGCGGGATCAGAGGAGGAGAACGAGGGGGAAATCATAGACGAGATCGAACAAGTGGTGACGGGACAAGGCGACGAGGACTACGAGGAGATCATCACGGCAGATGCGTTGACTCAAGGGGAAACGCAGATAATCGAGACTTCAGAGGGGCCCATTCAGTTGGTTAAGGTGCGGATTCCGAACGAGAATGGAGAGGAAGAGGAAGCGTGGATTAAGATTGTGCCCGAGTAG
Protein Sequence
MSTGNSVFCLVCNGSCLSSRNSVQIFNKEGNTGREHIASLLSDILNKEIKEDPDQTQVLCKKCYKLVDELDELQARVIEIRNEIIDNHKGSVKKKEVEDESEMQDTKEVTESKSIEANKENEVPKKILDIPSSDEDSGQILAEKNSLQSIQDIEMELVKIHGEIEEEEVEQEKEENGMDIDDQNFHTFSNDGGEIVDSGAIEHSSDSDYEPPSSVTVATENLVEATAVEKSSTDNVKVKVEPGTEEPTSGHLGMEKPNILKKKTPTIANNVIIQKQEDKKSEELFTMPIVTRDGNLYTCLLCQGDETVAGEAKAIAIHMKQAHGARIYICDVCGEDFRKRNQLSAHLDEHVAAEDGDFQCEICNRIFSNLRLFRIHRRMHYPQAKAWECETCGKKYSSKNLLDEHVNTHLGVRPYICGLCGKDFASKYTFKAHEKTHEVRPRPFRCVQCPKSFLSQQNLTQHERTHSGMKEFSCHLCGKQFGSAHNLEVHSIVHTGYKPFVCGLCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYQCSDCGKGFKRRRLLDYHVKAAHTGERPFKCDVCEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQAQGHLNDTIVVNQPRLTTDDDQLVTVNSAGEMEIVDAATAAAADSKLYIQDQDGTEHIIIDGQQISFAEAGSEEENEGEIIDEIEQVVTGQGDEDYEEIITADALTQGETQIIETSEGPIQLVKVRIPNENGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00886705;
90% Identity
iTF_01014863;
80% Identity
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