Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004695.1:67173920-67175568[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 8.9e-05 0.009 18.0 0.5 1 23 159 181 159 181 0.98

2 12 3.4e-06 0.00035 22.5 4.0 3 23 198 220 197 220 0.91

3 12 0.00015 0.016 17.3 2.0 1 23 226 248 226 248 0.91

4 12 3.6e-06 0.00036 22.4 0.6 1 23 252 274 252 274 0.98

5 12 8.6e-06 0.00087 21.2 1.6 2 23 292 313 291 313 0.97

6 12 8.8e-06 0.00089 21.2 3.0 1 23 319 341 319 341 0.98

7 12 4.5e-06 0.00045 22.1 0.5 1 23 347 369 347 369 0.98

8 12 0.00056 0.057 15.5 0.8 2 23 380 401 379 401 0.95

9 12 1.8e-05 0.0018 20.2 2.7 1 23 422 444 422 444 0.95

10 12 1.9e-05 0.0019 20.1 0.4 1 23 449 471 449 471 0.97

11 12 3.8e-05 0.0038 19.2 1.4 1 23 477 498 477 498 0.96

12 12 3.6e-06 0.00036 22.4 1.1 1 23 504 526 504 526 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	8.9e-05	0.009	18.0	0.5	1	23	159	181	159	181	0.98
2	12	3.4e-06	0.00035	22.5	4.0	3	23	198	220	197	220	0.91
3	12	0.00015	0.016	17.3	2.0	1	23	226	248	226	248	0.91
4	12	3.6e-06	0.00036	22.4	0.6	1	23	252	274	252	274	0.98
5	12	8.6e-06	0.00087	21.2	1.6	2	23	292	313	291	313	0.97
6	12	8.8e-06	0.00089	21.2	3.0	1	23	319	341	319	341	0.98
7	12	4.5e-06	0.00045	22.1	0.5	1	23	347	369	347	369	0.98
8	12	0.00056	0.057	15.5	0.8	2	23	380	401	379	401	0.95
9	12	1.8e-05	0.0018	20.2	2.7	1	23	422	444	422	444	0.95
10	12	1.9e-05	0.0019	20.1	0.4	1	23	449	471	449	471	0.97
11	12	3.8e-05	0.0038	19.2	1.4	1	23	477	498	477	498	0.96
12	12	3.6e-06	0.00036	22.4	1.1	1	23	504	526	504	526	0.99

Sequence Information

Coding Sequence: ATGGCCGAGTCTGTTGTTTCATATGAAGATTTTACCAAAATATGCAGGCTTTGCTTGAAGAAGGATGAattaatgtcaatatttttgGTACCAGACTTTTTACAAAATCTTAAATACATCACAAACATCAAAGTAACCACGAGAGACAAACTTCCCAAATCCGTCTGTACAACATGTATTGAACAACTGAATTATATTAATTCTTTCATCGAAACCTGCAAAACCAATGATGCCATACTCAAAGCCATCTTATTTCAAGCGCAAGACAACAAAGTTTTGCAGAACTTGGAATCTACATTGAGTCCTGAAGGTCTTAAATCCGAACAACCTGTTGAAGATATTCATGTGAAACTTGAGGATGTGGATGAAAACGTAGAAGATTTAATAACCGTAAAAATTATTAACGATGAACGTCAGACTAAAGATTGTATTCCAACAAAGGAACAGAGAACTgaacaaaaacagaaaaagcaGTTTCCATGTACTGAATGTAATAAAGTATTTGCTAGCTTGATCTCTTTCAGAGGTCATCTTAAGAAACACAGAAGAGTAAAGAAAGAACGAATTGGCATGAAGAAAAGAAATGACTTGTGCAAGTGCATATATTGTAAAAAGGTATTCACAAGAAGGAGTGACCTAAAGAGACACTTAAGAATCCACACGGGGGTGAAACTTTTTGCTTGCACTTTGTGTGATAAAAAATTTACCCAAAAGAATTCACTGGTACGTCATAACTTCCTTCATAACGGCAAATTCACTTGTACCGTCTGCAGCAGGCCATTTACTCGAGAAAGCCAACTAGAAAATCATCTGAAAGCTCACGATGCAGAGGGTAAAAAGAAGATAGACTACAGTAAAAGCTTGAATTCACTAACGTGTAGCTTCTGTGAAAAAACGTTCAGTTCTAGAAAGTACCTAGAAGGCCATATGCGTATGCATTCTGGATCAAGAGATTTCGAGTGTGATATATGCAAAAAAACCTTTCCAGTAAAACATTCATTGAAACGCCATTATCTGAGTCACACGGAAATAAAAGCCTTCAAGTGTGATGAATGTGGTGCAGCTTTTAACAGAAACATGCTCTTGCAACGACATAAAAAAGTGCACGACGACAATTCCGAAGAAAAGCGCAGATTGACCTGTACAGAATGCGGTAAATATTTCCTCTTCCCGAGCCATCTTCGACGTCACGCCGCAGTACATGATCCTAATCAAAAAGCCCTGATTTATAAACCTACACAGCGCATCAGAACGCCGGGACGTTTCTTGTGTTGCTACTGCGGCAAACAGTTCACGCAAGTGAATAATTTGACTGTGCATGTCCGGACACATACCGGGGAAAGATTCAGTTGCGAAGTTTGCGGTAACAGTTACTCTACCAGGGATTCCCTGAAAACTCATCTTATGGCGCACAGAGGAGAGAAACCCTACCCTTGCCCACATTGTGGTAAACAGTTTCGCAAACCGAGTTTGTACAAGCACCTTTTGATCCATAAGGATGTCCGACGGTTCAAGTGTGAGGTTTGTAAAAAAGGGTTCATCAGGAAAGATCAGTTGGATCAGCATAGGAGAATACATAGTTAG
Protein Sequence: MAESVVSYEDFTKICRLCLKKDELMSIFLVPDFLQNLKYITNIKVTTRDKLPKSVCTTCIEQLNYINSFIETCKTNDAILKAILFQAQDNKVLQNLESTLSPEGLKSEQPVEDIHVKLEDVDENVEDLITVKIINDERQTKDCIPTKEQRTEQKQKKQFPCTECNKVFASLISFRGHLKKHRRVKKERIGMKKRNDLCKCIYCKKVFTRRSDLKRHLRIHTGVKLFACTLCDKKFTQKNSLVRHNFLHNGKFTCTVCSRPFTRESQLENHLKAHDAEGKKKIDYSKSLNSLTCSFCEKTFSSRKYLEGHMRMHSGSRDFECDICKKTFPVKHSLKRHYLSHTEIKAFKCDECGAAFNRNMLLQRHKKVHDDNSEEKRRLTCTECGKYFLFPSHLRRHAAVHDPNQKALIYKPTQRIRTPGRFLCCYCGKQFTQVNNLTVHVRTHTGERFSCEVCGNSYSTRDSLKTHLMAHRGEKPYPCPHCGKQFRKPSLYKHLLIHKDVRRFKCEVCKKGFIRKDQLDQHRRIHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -