Phis028904.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004697.1:130041-138340[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.021 2.1 10.6 2.3 1 23 403 425 403 425 0.98 2 34 0.00091 0.092 14.8 2.1 1 23 434 456 434 456 0.99 3 34 0.044 4.5 9.5 3.0 1 23 465 487 465 487 0.97 4 34 0.0026 0.26 13.4 3.4 1 23 496 518 496 518 0.97 5 34 0.25 25 7.1 6.1 1 21 527 547 527 549 0.95 6 34 3.9e-05 0.0039 19.1 3.0 1 23 558 580 558 580 0.98 7 34 0.045 4.5 9.5 2.5 1 23 589 611 589 611 0.96 8 34 0.0053 0.54 12.4 0.7 1 23 620 642 620 642 0.96 9 34 0.0035 0.35 13.0 1.2 1 23 651 673 651 673 0.96 10 34 0.03 3.1 10.0 3.6 1 23 682 704 682 704 0.99 11 34 0.0024 0.24 13.5 3.7 1 23 713 735 713 735 0.98 12 34 0.019 1.9 10.7 3.9 1 23 744 766 744 766 0.98 13 34 0.0034 0.34 13.0 0.2 1 23 775 797 775 797 0.97 14 34 0.019 1.9 10.7 0.5 1 23 806 828 806 828 0.96 15 34 0.02 2 10.6 0.5 1 23 837 859 837 859 0.98 16 34 0.0008 0.081 15.0 1.0 1 23 868 890 868 890 0.97 17 34 0.033 3.4 9.9 0.8 1 23 899 921 899 921 0.93 18 34 0.064 6.5 9.0 1.1 1 23 930 952 930 952 0.96 19 34 0.0082 0.83 11.8 2.0 1 23 961 983 961 983 0.98 20 34 0.17 17 7.7 4.4 1 23 992 1014 992 1014 0.98 21 34 0.0037 0.37 12.9 1.2 1 23 1023 1045 1023 1045 0.98 22 34 0.0072 0.73 12.0 3.4 1 23 1054 1076 1054 1076 0.97 23 34 0.04 4 9.7 2.8 1 23 1085 1107 1085 1107 0.97 24 34 0.011 1.1 11.5 1.0 1 23 1116 1138 1116 1138 0.95 25 34 0.0038 0.39 12.9 3.7 1 23 1147 1169 1147 1169 0.97 26 34 0.0014 0.14 14.3 0.7 1 23 1178 1200 1178 1200 0.99 27 34 0.0036 0.36 12.9 1.7 1 23 1209 1231 1209 1231 0.97 28 34 0.00013 0.013 17.5 1.5 1 23 1240 1262 1240 1262 0.97 29 34 0.00065 0.066 15.3 3.2 1 23 1271 1293 1271 1293 0.98 30 34 0.11 11 8.3 2.5 1 23 1302 1324 1302 1324 0.96 31 34 0.0042 0.42 12.7 2.0 1 23 1333 1355 1333 1355 0.98 32 34 0.0056 0.57 12.3 1.2 1 23 1364 1386 1364 1386 0.98 33 34 0.18 18 7.6 2.0 1 23 1395 1417 1395 1417 0.97 34 34 0.12 12 8.2 7.2 1 23 1426 1448 1426 1448 0.97
Sequence Information
- Coding Sequence
- ATGGACGATGAGAATGAATATTTGTGTAGACTGTGTCTCGGTGCAATATGTGATGAAAATTTCGGAGTGATAGAAGGAATTATAAGAAGAAACTTGGATATGCTTTTGCCAAACACAAAGTTGGATATAAGTGAGAAACCAGTAATATGCAACAAATGTTCCAGCAACCTTAAAGATGCTTTTGATTTTAAATCTGCATATCTCTGTAACATTGACAAAGGTAAAATTCTGGAAAACACACCTCAAATTAAGGTGAAAATTGAACATGGAGAAGAAAATAATCAGAACAGCAAGTCGGATATTGTGTCTGACAATCAGAAGAAATGTCTTTTATGTGTGCAGCTAATAACCGGTAGCCCTGTATCGCTAGTTGAAGGAGAAGAGGCGGTTTCAGTTAGGAATATGCTTCAGAAATGTATACCAGAGGcgGATTTCAAAAATAAGGAGCCTGTAATTTGCGAAACTTGCCACCATTGTCTTCGTAaaggtttcaattttttaaaaaactgcaCCGACGTAGAGGAGCAGGTAGTAAAATACTGTGAGGCTAAAGCGGGGGACAATTCTCGCATCCAGTTAAAAGACGTAGTACAGTTTTGTGCGAAGGGTGTAGAAGGTAAGGGAGGCACCGTCACGGACGCAAATAAAGACGACAGCTGCAGTCCAAAAACAAACATGTTGGACATCGTTAATATCAAGAGAGAGGCCTTTGTGGACGCCGATTATTTGAACGTGTGCATTAAAACGGAAGAACCCAGTGACGATGAAATGGAAATCGAACCGGAGGATCAGATCATGCTAAACGATAACGTATATATCAAAGATGAAGAGGTCGACGTTAAGCCTGAAATGTTTCATTGCGAAAGTATTTTAACAAACCCATGTCCCGACAACCTCATCATAGAGAGAATCGACATCCTCGAAGAGGAGAGCAGCAACGCTTTTGGGGATGACACCTCCGCTCACAGAAAACGAAGCGGTTCGACACTGAGCACCTCTCCGGTTCCCGCCACTGTCGTAAAGATCAGATGCGGATCGTGCAGGAAGGTGGTGCAGAAAGGCCCCAGTCTCATGCCCTCGAAGGTGTTCCTCCGGGACAGCGTGATCGACCACACGTCTTTCAAATGTGACACCTGCAAACGTGACAGCCTGGACTCGCTCTATTCGCCCAACCTCACCTACAACAACCGCTTCGAGGCGGTGAAGTTCAAGTGCACCATGTGCATGTACGAGACGCGGTACAGGAGCGCACTCAAGTCGCACATGCTGAAGCACAAGGACCCCTCCGAGGTGAAGATGTATAAGTGCAACATCTGCGACTACGTCACCAGGCACAAGACGGCCCTCAAGCCTCACATGCTGAAGCACCAGGACCCTTCCGAAGTCCAGATGTTCCATTGCAAGGTCTGCGATTACCAGACCAAATACAAACCCGCCCTCAAGTCGCACACGCTCAGTCACATGGACCCCTCCGAGGTCAATATGCACTCGTGTGACCTTTGCGAGTACAGCACGAGGTTCAAGAGCTCCCTTAACTCCCACATGCTCAAGCACAAGGACCCCTCAGAGGTGGAGATGTTCAAGTGCGAGCTGTGCGAGTACCAAACCAAGCATAAAACCTCGCTCAAGTCACACATGCTCTGCCACAAGGACCCCTCCGAAGTCCAGATGTTTAAATGCGAGGAGTGCGACTACACCACGAAGTTCAAGAGCTCGCTGAAATCCCACATGCTGAAGCACATGGACTCCTCGGAAGTGACCATGTACAAGTGTGACTCGTGCGAGTACGAGACCAGGCACAAGAGCGCGCTCACCTCCCACAGCCTGAACCACAAAGACAACTCAGAGGTGCCGCTGTACTTGTGCAATCTGTGCCCCTACGAGACGAAGCGCCGTGCCAACTATAAGTTGCACGTAATGACCCACAAGGACCCATCAGAGATACAGATGTACACCTGTGAGACGTGCGGCTACAGCACAAAGTACAAGAGTGTACTCAAGTCGCACAACCTCATCCACCAGGACGCCTCCGAGGTGGAGATGTACAAGTGCCATTCGTGCGACTATGAGACGCGACGCCGGCAGAACATCAAGATGCACGTGTTGACCCATATGGATCcctccgagatccccatgtacaCGTGCGACCACTGCGAGTACAAGACCAAGTACAAGAGCGCGCTCAAGTCGCACCTCCTGAACCACAAAGATCCCTCCGAGATACAGATGCATACTTGCGACCAGTGCGAGTATGAGACCAAATACAAGTTCTCTCTCAAGTCCCATATGTTAAGTCACAAGTTGCCCTCGGAGGTGCCCAGTTATGCTTGCGAGTCCTGTCCCTACGAGACGAAGCGCAAAGCCAACTACCAGTCGCACATACTGATCCACAAAGACCCCTCCGAGATCAAGATGTACGCCTGTGATGTGTGCGAGTATAAGACAAGGTACCGGAGCGCCCTAAATTCGCACTCGCTGAGTCACAAAGACCCCTCAGAAACGCAAATGTACGTGTGCGACTCATGTCCGTACGAGACAAAGTACAAAGGTGCCCTCAAGACGCATAAGTTGAGCCACAAGGACTCATCGGAATTGCAGACGTACGCCTGTACTGTGTGTACGTACGAGACCAAGCGAAAAATGAACTTCCAGGCGCATATGCTGAGCCACAAGGATCCCTCGGAAGTACAGATGTACGCTTGCGACACCTGCGAGTACAAGACGCGCTACAAGAGCGCATTGAAGTCCCACTCGTTGGCCCACAAGGATCCGTCAGAGATTAGGATGTACAAATGTGAGACGTGCGAGTACCAGACGCGATACAAGAGTGCGATAAAGACTCATATAGTAAACCACTTGCAGCCGTCGGAGATACAGATGTTCAAGTGCGAGTCGTGCGAGTATGAGACGAGGCACAAAGGTTCGCTCAAGGCGCACGTGTTGAAGCACAAGAGCCCTTCCGAGGTTCCGATGTACACCTGCGACTGTTGCCCGTATGAGACGAAGCGCAAGACCAGCTTCAAGTCGCACATGCTGATGCACAAGGACCCCTCCGAGATACACATGTACAGTTGCGACACGTGCGAGTACAAGACAAAGTACAAAAGTGCCCTTAACTCTCACGTTCTCTCCCACAAGGACCCCTCTGAAGTGAAGATGCACACGTGCGACTTCTGCCAGTACACCACGAAATACAAGGGTGCACTCAAGTCGCATATGCTGAATCACAAAGATGCATCGGAGGTCACAGTGTACACGTGCGACTTCTGTACTTACGAGACGAGACGCAAGACGAACTTTCAGATACACTCCCTGTCTCACAAGAACCCTTCAGAGATCAAGATGCACGCGTGCGATATCTGCGAGTACAAGACAAAATATAAAAGCGCTCTGAACTCGCACGCCCTATCCCACAAGGACCCTTCCGAGGTGCAGATGTTCAAATGTCACACTTGTGATTACGAGACGAGATACAAGAGCGCTCTGAAATCCCACGTGTCGAATCACAGTCAGTCGTCGGAAACACACGCGTACAAATGCGACAGCTGCGACTTTGAGACGAACAACAAGGCGACCCTAAAATCACACATTATAACACATAAGGACCCCTTGGAACTGGTCATATACACATGCGATCTCTGCGACTACGAGACGAAGCGGAAGACCAACTTTCAGTCGCATTCGTTGATACACAAAGATCCGGCAGATGTACAGATGTACAAGTGCGACGAGTGCGATTACGTGACCAAATACAAGAGTTCCCTTAAATCACACGTCTTGTACCACAAGGACCCCTCCGAGATCGAGATGTTCAAATGCGACATGTGCGACTACGAGACCAAGCACAAAAGCACCTTGAAATCGCACGTTCTGATGCACAAAGACCCTTCGGAGGTGCAGATGTATCACTGCGACTCTTGCGACTACAAGACGAAATACAAGAGCGCGCTCAGCTCGCACGCCCTCAACCACAAGGATCCGAGCGAGATTAagatgttcaaatgtgacaTGTGCAGCTACGAGTCGCGGTTCAAGAGCAGCTTAAAGTCGCACATCCTGAACCACAAAGACCCCTCCGAGGTGCAGATGTTCACTTGCGATCAGTGCGACTACGAGTCCAAGTACAAGCGTGCCCTGTCGTCGCATATGCTGAACCACATGGACCCCTCCGAAATACAGATGTTCAAGTGCGCGTCATGCGATTACGAGACCAAGTATAAAAATGCGCTCAAGCTGCACTTGGCGCATCACAAGGATCCCCTGGAGAGCGAGCTGCATTCGTGTGACAAGTGCGATTACAAGTCCAAGTCCAAGACGTGCTTGAAGTCGCATATGGTGAAGCACGAGGAGCTTCCGGCCGCCTCGACGGCCTGTCGGTAA
- Protein Sequence
- MDDENEYLCRLCLGAICDENFGVIEGIIRRNLDMLLPNTKLDISEKPVICNKCSSNLKDAFDFKSAYLCNIDKGKILENTPQIKVKIEHGEENNQNSKSDIVSDNQKKCLLCVQLITGSPVSLVEGEEAVSVRNMLQKCIPEADFKNKEPVICETCHHCLRKGFNFLKNCTDVEEQVVKYCEAKAGDNSRIQLKDVVQFCAKGVEGKGGTVTDANKDDSCSPKTNMLDIVNIKREAFVDADYLNVCIKTEEPSDDEMEIEPEDQIMLNDNVYIKDEEVDVKPEMFHCESILTNPCPDNLIIERIDILEEESSNAFGDDTSAHRKRSGSTLSTSPVPATVVKIRCGSCRKVVQKGPSLMPSKVFLRDSVIDHTSFKCDTCKRDSLDSLYSPNLTYNNRFEAVKFKCTMCMYETRYRSALKSHMLKHKDPSEVKMYKCNICDYVTRHKTALKPHMLKHQDPSEVQMFHCKVCDYQTKYKPALKSHTLSHMDPSEVNMHSCDLCEYSTRFKSSLNSHMLKHKDPSEVEMFKCELCEYQTKHKTSLKSHMLCHKDPSEVQMFKCEECDYTTKFKSSLKSHMLKHMDSSEVTMYKCDSCEYETRHKSALTSHSLNHKDNSEVPLYLCNLCPYETKRRANYKLHVMTHKDPSEIQMYTCETCGYSTKYKSVLKSHNLIHQDASEVEMYKCHSCDYETRRRQNIKMHVLTHMDPSEIPMYTCDHCEYKTKYKSALKSHLLNHKDPSEIQMHTCDQCEYETKYKFSLKSHMLSHKLPSEVPSYACESCPYETKRKANYQSHILIHKDPSEIKMYACDVCEYKTRYRSALNSHSLSHKDPSETQMYVCDSCPYETKYKGALKTHKLSHKDSSELQTYACTVCTYETKRKMNFQAHMLSHKDPSEVQMYACDTCEYKTRYKSALKSHSLAHKDPSEIRMYKCETCEYQTRYKSAIKTHIVNHLQPSEIQMFKCESCEYETRHKGSLKAHVLKHKSPSEVPMYTCDCCPYETKRKTSFKSHMLMHKDPSEIHMYSCDTCEYKTKYKSALNSHVLSHKDPSEVKMHTCDFCQYTTKYKGALKSHMLNHKDASEVTVYTCDFCTYETRRKTNFQIHSLSHKNPSEIKMHACDICEYKTKYKSALNSHALSHKDPSEVQMFKCHTCDYETRYKSALKSHVSNHSQSSETHAYKCDSCDFETNNKATLKSHIITHKDPLELVIYTCDLCDYETKRKTNFQSHSLIHKDPADVQMYKCDECDYVTKYKSSLKSHVLYHKDPSEIEMFKCDMCDYETKHKSTLKSHVLMHKDPSEVQMYHCDSCDYKTKYKSALSSHALNHKDPSEIKMFKCDMCSYESRFKSSLKSHILNHKDPSEVQMFTCDQCDYESKYKRALSSHMLNHMDPSEIQMFKCASCDYETKYKNALKLHLAHHKDPLESELHSCDKCDYKSKSKTCLKSHMVKHEELPAASTACR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -