Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004695.1:64395278-64399247[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.012 1.2 11.3 0.8 2 23 163 184 162 184 0.97

2 15 0.0057 0.57 12.3 1.3 3 23 191 212 189 212 0.92

3 15 0.00096 0.097 14.8 0.5 3 23 226 247 224 247 0.93

4 15 0.00026 0.026 16.5 0.3 2 23 262 283 261 283 0.96

5 15 0.011 1.1 11.5 2.9 2 23 290 311 289 311 0.97

6 15 1.3e-05 0.0013 20.6 0.9 1 23 319 341 319 341 0.99

7 15 1.5e-07 1.5e-05 26.7 1.6 1 23 346 368 346 368 0.98

8 15 0.013 1.3 11.2 5.9 1 23 374 396 374 396 0.98

9 15 9.9e-07 0.0001 24.2 1.2 1 23 402 424 402 424 0.97

10 15 0.0013 0.14 14.3 2.6 1 23 430 452 430 452 0.97

11 15 1.7e-05 0.0017 20.3 0.6 3 23 460 480 458 480 0.96

12 15 2.2e-07 2.2e-05 26.2 0.0 2 23 486 507 485 507 0.97

13 15 3.2e-05 0.0033 19.4 1.3 1 23 513 535 513 535 0.98

14 15 4.9e-07 5e-05 25.1 1.0 1 23 541 563 541 563 0.99

15 15 3.2e-05 0.0033 19.4 4.9 1 23 569 591 569 591 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.012	1.2	11.3	0.8	2	23	163	184	162	184	0.97
2	15	0.0057	0.57	12.3	1.3	3	23	191	212	189	212	0.92
3	15	0.00096	0.097	14.8	0.5	3	23	226	247	224	247	0.93
4	15	0.00026	0.026	16.5	0.3	2	23	262	283	261	283	0.96
5	15	0.011	1.1	11.5	2.9	2	23	290	311	289	311	0.97
6	15	1.3e-05	0.0013	20.6	0.9	1	23	319	341	319	341	0.99
7	15	1.5e-07	1.5e-05	26.7	1.6	1	23	346	368	346	368	0.98
8	15	0.013	1.3	11.2	5.9	1	23	374	396	374	396	0.98
9	15	9.9e-07	0.0001	24.2	1.2	1	23	402	424	402	424	0.97
10	15	0.0013	0.14	14.3	2.6	1	23	430	452	430	452	0.97
11	15	1.7e-05	0.0017	20.3	0.6	3	23	460	480	458	480	0.96
12	15	2.2e-07	2.2e-05	26.2	0.0	2	23	486	507	485	507	0.97
13	15	3.2e-05	0.0033	19.4	1.3	1	23	513	535	513	535	0.98
14	15	4.9e-07	5e-05	25.1	1.0	1	23	541	563	541	563	0.99
15	15	3.2e-05	0.0033	19.4	4.9	1	23	569	591	569	591	0.99

Sequence Information

Coding Sequence: ATGTCGGGATTGTCgggtataaatattattttgaggAATGTATCTGTTGATGACTTGAAAAATATGTGTAGAATATGTGTCTCATCTCTCCAGAGTGatggtattttaatatttcaatctcCAGAAAAAGGTCAAGATATTTTATCAGACAAGATTATGGCCTGTGCTTCAGTTcagGTTGTAGATGGAGATGGCTTACCATCATATATTTGTAAAGCTTGTCTGGGTTTGTTGGATCAGgcttacttattaaaaaaacagtgtGAAGAATCCGACAAAGCTTTGAGAAGTTTCTTaacaagttataataaaatgtttaatggCGAAGAAGAGCCTAGTTGTGACATAAATGACATAAATACGGATAATGATTTTGATAGCACCAATGCAGGGCAATCCAACAGTGGTAGTGAAGTTCCTTTACAGAGAGAAACAAGTGTAAGAAGTAGTTATTCAAATAATGAGGCCTCGGCAGTTGCAGAATTAAAATGTGATATTTGTTCAAGTCTTTTTCAGAAGTTAAACCAACTGAAATTACATATGCGTGTACATAGAAAAAAACCAGtgaattgtaaattttgtttgGAATCTTTCAGGTCGTCCTATGAACTAACCCaacataataaattacaacataGCTCTCTTAAAAGAAAAGTTCAAGAGACAACACATTTATGTTCGGTTTGTGAGGAAAAGTTCTCCGACAATAATGCTTTGATAGACCACATGCTTTTAAAACATACTGAAAAAAGAGTAAATATATCTGATAAATCAAGAGAATTGATATGCAGTATTTGCAATAAAACCTATTTGAATCAGAGAAACTTAATGGCTCATATGGGTACTCATACTGGTAACAAACCATTGCAGTGCAATATGTGCGAAAAAAGGTTCACTCAAGGAAGAGCCTTTGCTTGCCATATGAGAACTCATTCAGATGAAATTGAAAAACCATTTAAATGCAGTGTTTGTCGCAAGGAGTTTGCAATGGAGAGTCAGTTAATGGTTCATATGAAGAAACATAGTGGACAGAAACATACATGTAATATATGTGGAAAAACATACAGCAATTCAGgaaatttaAAGGGTCACATGAGGTTGCATACCGGAGACAAGCCCTATACATGTCATATTTGTAATCGGAAATTCGCTCAAAGTAATGCCCATTCCTACCACATGAAAACTCACTTTGGCGAAAAACCATTCGCGTGTGATATTTGCACAAAAACATTTACAACTAACGGCCAACTTACAAATCATAGACGATTACATACAGGGGAACGACCATTTGCTTGTACAATGTGTCCAAAGAGATTTACACAGAAGTTCGCTTGTACAATTCACATAATGACTCATACAGGTGATAAACCACACCTGTGCAGCATCTGTGGTAAAAAGTACACTCAAGGTAGTCAACTTGCGGAACACATAAGAGTGCATAATGGTGAAACATTGCAATGTAGTGTTTGTGGAAAAGCTTATACGACTGCAGGCAACCTAGCTGCTCACATGCGTATTCACACGGGGATCAAACCGCACGTGTGCGACATTTGCAACAAGGCGTTTTATGTCCCTAATAAACTGGCGAAGCATAAACGTACCCACACGGGTGACAGGCCATACAGTTGTAATGACTGTTCTAAAAAGTTTGTGACACTGGAATCGTTGAAAATTCATATTAGAACTCATTCTGGTGAGCGCCCTTATGTCTGTCATTACTGCGATAAGAGATTCATTAGTGGTTCACATCGTACTGCTCATATGAAGACCCACAGTGAGATAAAGTCGCATATTTGCGGGGTGTGTTGTAATGCTTTTGGTAGTTCTGCTGAAATGGTAACTCATCAGACAGTTTGCTGTAAATCTATGAGAGATTCTTTTACCAATTTGAGTGGGGAATTTGTGTAA
Protein Sequence: MSGLSGINIILRNVSVDDLKNMCRICVSSLQSDGILIFQSPEKGQDILSDKIMACASVQVVDGDGLPSYICKACLGLLDQAYLLKKQCEESDKALRSFLTSYNKMFNGEEEPSCDINDINTDNDFDSTNAGQSNSGSEVPLQRETSVRSSYSNNEASAVAELKCDICSSLFQKLNQLKLHMRVHRKKPVNCKFCLESFRSSYELTQHNKLQHSSLKRKVQETTHLCSVCEEKFSDNNALIDHMLLKHTEKRVNISDKSRELICSICNKTYLNQRNLMAHMGTHTGNKPLQCNMCEKRFTQGRAFACHMRTHSDEIEKPFKCSVCRKEFAMESQLMVHMKKHSGQKHTCNICGKTYSNSGNLKGHMRLHTGDKPYTCHICNRKFAQSNAHSYHMKTHFGEKPFACDICTKTFTTNGQLTNHRRLHTGERPFACTMCPKRFTQKFACTIHIMTHTGDKPHLCSICGKKYTQGSQLAEHIRVHNGETLQCSVCGKAYTTAGNLAAHMRIHTGIKPHVCDICNKAFYVPNKLAKHKRTHTGDRPYSCNDCSKKFVTLESLKIHIRTHSGERPYVCHYCDKRFISGSHRTAHMKTHSEIKSHICGVCCNAFGSSAEMVTHQTVCCKSMRDSFTNLSGEFV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -