Phis007605.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004692.1:115934621-115938899[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00049 0.05 15.7 1.1 2 23 65 87 64 87 0.95 2 21 0.0089 0.9 11.7 0.7 1 23 111 133 111 133 0.98 3 21 1.9 2e+02 4.3 0.3 1 23 137 159 137 159 0.87 4 21 0.0081 0.82 11.8 0.9 1 23 165 188 165 188 0.95 5 21 0.00012 0.012 17.6 2.9 1 23 194 216 194 216 0.98 6 21 0.032 3.3 10.0 0.2 1 23 222 245 222 245 0.90 7 21 8.3e-05 0.0084 18.1 2.2 2 23 257 279 256 279 0.95 8 21 0.00011 0.011 17.8 2.0 3 23 293 313 291 313 0.96 9 21 7.4e-05 0.0075 18.3 1.0 1 23 319 341 319 341 0.98 10 21 3.8e-06 0.00039 22.3 0.1 1 23 347 369 347 369 0.99 11 21 0.38 38 6.6 0.7 2 23 453 475 452 475 0.94 12 21 0.061 6.1 9.1 0.1 1 23 494 517 494 517 0.97 13 21 0.0048 0.48 12.6 2.0 1 23 521 543 521 543 0.98 14 21 0.0029 0.3 13.2 2.1 1 23 549 572 549 572 0.98 15 21 0.048 4.8 9.4 0.4 1 23 578 600 578 600 0.88 16 21 0.0076 0.77 11.9 0.8 1 23 606 629 606 629 0.96 17 21 0.0008 0.081 15.0 0.7 2 23 641 663 640 663 0.96 18 21 4.1e-05 0.0042 19.1 1.0 3 23 677 697 675 697 0.96 19 21 3.2e-05 0.0033 19.4 1.5 1 23 703 725 703 725 0.97 20 21 5.9e-07 6e-05 24.9 0.5 1 23 731 753 731 753 0.98 21 21 0.033 3.3 9.9 0.1 1 21 759 779 759 780 0.96
Sequence Information
- Coding Sequence
- ATGGGTACACAACTATCGTTATTACACACCACCATAATATATAGgaGCGATGATAAGTCTTGGTGGCAAAACCAAATTACAAAATCCCTTAAAAAGGAACCAAAGTCCCTTAAAAAGGAACCAAAGTCCAAAGCAAAAACGACGAGGAAATACATCCACAAACTGAAACCCAATCAGAGAGCCCGCAGCTGGATGTGTAAAatttgttttgaggaattcagCTCTAGGAAGGATCTCTTCAATCACAGAAAATCAATTCATGAAGACACAGACGACATCGTCAGCAGAGAAGAAGCGCAGAAATTCATATATGACGAAATACACGATTTCTACACATGCAACAACTGCTCGGCAGAGTTCCAAACTAAAGAAGAAGTAGAAAAACACTTCGAGACCCATGAGGAAAAATACGACTGCAATGTCTGTAAAAAAACCGTTCTCGGTGCTCTAGACTTCTCCTCGCACATGCAACAGCATCGGGAAGACAAACACTTTCCGTGTCCGCTATGTCACCACATCACCAGCAGAAAGTCAGCCATGCTGGTCCATATAGTGCGGCTGCATTTTAGGAAATACGATTTCCAGTGCCGATCATGTGGAAAGTGTTTCAATGACGCCTCTACCTTTAAGGAGCACGAGAACATCCACCTCGGCTTAAAACCGTTCATCTGTATCGTCTGCAATAAAGAGTTTGTCTACTCACGGTACCTCGTCGCACATCAAGTGCGCAATCACAGGGTACGCGTTGTAGATAAAGACTCGAAGACTCAGTGCCACATGTGCTCAAAAATATTCGCAAGAAACGAAACTCTTGTCAAACATATGCTCAATAAACATTTAACGTACCACGAAGGTCCGGCAGAGAAGAAACACCTCTGTGATGTGTGCGGACAGGGTTTTTCGAGGACTGACAAATTGAAAATCCACTACAGGAAGCACACAGGGGAGAAGCCTTTCTCGTGTGTCTACTGTAGTAAAAGCTTTATTAAAAAAGACTACTTGATAATGCATGAAAGGATCCACAATGGGGAGAAGCCGTACGTCTGTGATGTTTGCGGCAAAAGCTTTAATCAAGGGGCGCCTCTACGTATCCACATGCGCAGTCATACAGGCGAGAGGCCTTATAGGTTCTTCCCGGCGTTAGAGGTTGAATTAAGCGTTGGTGACAGCTGCTACGATGTGGGAAACTTATATAAGAAGGACAAAAAGAAGTCGCCGGATAAATTTCTGACCATCAAAAAGAAAATCAAAGAGGAAGTAGAAGACGAAGAGTACACTCCTCCCGGatacaaaaagaaaagaatAAAGAAAATGAAGCCTACTCAGAAGATAAAGAAACAGGAGCATAAGATATGGACGTGCAGGAGGTGTTTAGTTGAGTTTGAAACCAGACGGGAGCTCACCGAACACACCAAATTATATCATGTGGAGGAGCCCAAAGACCAGCACACTTTCAAATATGATGAGGAACAAGATCAATACACCTGCAATACTTGTTCGGCGGAGTACCAAACGAAGGGTGAGGTAGAGGAGCATATATCTAAGGTGCACGAAGAGTTTTACACTTGCGAAGTTTGCAAACACACTTCCAAGAAAGCTTACAGCTTCGCAGTGCATATGAAGGCTCACAGCACGGATGACACTTACACGTGTCCATTATGTAGCTATAATACTCCCAGAAGGACTTGTTTACAGACTCACATCAATAGGGTGCATTACCATAAGTTCTACTACACTTGCGCTACTTGCGGTAAAGGCTTCAATGATTCCGTCATCTTCAAAGAGCACAACAATGAGCACTTGGGTATAAAGCCGTTCGTTTGTGTTGTATGTAATAAAGAATTCGTCTACTCGAGATACATGCTTATACATCAGACTAGGTACCACACGGTCCACATAGAGGGCACGCTTCACAAAACCCAGTGCAGTATCTGCTTGAAGGTATTCAGCAAGGTGGCCACCCTTTTGAAACACATCACAACTAAGCACAGCAACACTGGTGATGACAAGCCGGAAAAGAGGCATCTGTGTGATATGTGCGGCAAGGGTTTTGGAACGTCAGATAAGCTGAAAATTCACTACCGAATTCATACCGGAGACAAGCCTTTTGCTTGTCGTTATTGCGATAAGAGGTTCACCAAGAAGGACTATTTGGTGATGCATGAAAGAGTGCATACTGGGGAGAAGCCCTATCCGTGTGAGTACTGCGGTAAATGTTTCAATCAGGCAGCTTCGTTGAGGATTCATGTTAGAGGACACACTGGAGAGAGACCCTATGTTTGTCAGTTCTGTAATGGAGGGTACATTTCTCGAGGGTCTCTGAACTTACATATGAAAATCTGTAATGGTGTCAATGCCTAA
- Protein Sequence
- MGTQLSLLHTTIIYRSDDKSWWQNQITKSLKKEPKSLKKEPKSKAKTTRKYIHKLKPNQRARSWMCKICFEEFSSRKDLFNHRKSIHEDTDDIVSREEAQKFIYDEIHDFYTCNNCSAEFQTKEEVEKHFETHEEKYDCNVCKKTVLGALDFSSHMQQHREDKHFPCPLCHHITSRKSAMLVHIVRLHFRKYDFQCRSCGKCFNDASTFKEHENIHLGLKPFICIVCNKEFVYSRYLVAHQVRNHRVRVVDKDSKTQCHMCSKIFARNETLVKHMLNKHLTYHEGPAEKKHLCDVCGQGFSRTDKLKIHYRKHTGEKPFSCVYCSKSFIKKDYLIMHERIHNGEKPYVCDVCGKSFNQGAPLRIHMRSHTGERPYRFFPALEVELSVGDSCYDVGNLYKKDKKKSPDKFLTIKKKIKEEVEDEEYTPPGYKKKRIKKMKPTQKIKKQEHKIWTCRRCLVEFETRRELTEHTKLYHVEEPKDQHTFKYDEEQDQYTCNTCSAEYQTKGEVEEHISKVHEEFYTCEVCKHTSKKAYSFAVHMKAHSTDDTYTCPLCSYNTPRRTCLQTHINRVHYHKFYYTCATCGKGFNDSVIFKEHNNEHLGIKPFVCVVCNKEFVYSRYMLIHQTRYHTVHIEGTLHKTQCSICLKVFSKVATLLKHITTKHSNTGDDKPEKRHLCDMCGKGFGTSDKLKIHYRIHTGDKPFACRYCDKRFTKKDYLVMHERVHTGEKPYPCEYCGKCFNQAASLRIHVRGHTGERPYVCQFCNGGYISRGSLNLHMKICNGVNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00328436;
- 90% Identity
- iTF_01014839;
- 80% Identity
- -